New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2258126 =	17 (0.270)	6 (0.100)	5/324	NT	20.3%	intergenic (+181/‑211)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	AE015451	4022806 =	31 (0.530)					intergenic (‑501/+167)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit

ATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTACAGCAAAAGGATCCCTTCCATGA  >  AE015451/2257896‑2258340                                                                                                                                                                                                                                       |                                                                                                                                                                                                                       ctggggtggttcgccaagccgccctttaccgctaaggcgggcccggcatcggcggggcattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGc                                                                                                                                                                                                                     >  1:379004‑M1/231‑234 (MQ=255)     aacgccacgccaagccgccctttaccgctaaggcgggcccggcatcggcggggcattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGccc                                                                                                                                                                                                                   >  1:529912‑M1/227‑232 (MQ=255)                              cgctaaggcgggcccggcatcggcggggcattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGtt                                                                                                                                                                                        >  1:590880‑M1/202‑234 (MQ=255)                                                                                                 tgtctgctctgacagagccgttgccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagca                                                                                                                     >  2:710549‑M2/133‑234 (MQ=255)                                                                                                       tctcgctctcgctctcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCgaagatcaagatcaagatcaaaagccagatcaaaagccagatcaaacg                                                                                                                       <  1:553705‑M1/98‑4 (MQ=255)                                                                                                                agccgttgccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAg                                                                                                     <  1:710550‑M2/118‑1 (MQ=255)                                                                                                                     tcgctctcgcttcggcttttgattttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagat                                                                                                                                                     >  2:726611‑M1/115‑182 (MQ=255)                                                                                                                     gcccccATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCGTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACa                                                                                                <  1:173701/232‑1 (MQ=255)                                                                                                                              atcCGGCCCCTGCGCTGCGCGCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAgg                                                                                        <  2:1054550/234‑1 (MQ=255)                                                                                                                                     cccTGCGCTGCGCTCCGGGGCCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacag                                                                                                                 <  2:201251/202‑1 (MQ=21)                                                                                                                                      tttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTg                                                                                <  1:1099884‑M2/139‑1 (MQ=255)                                                                                                                                            ctgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAgg                                                                         >  1:653602/1‑235 (MQ=255)                                                                                                                                                    cGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCATTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGAc                                                                  <  1:726538/234‑1 (MQ=255)                                                                                                                                                             gatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcgaagggaggtgacgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatc                                                                                                                                                    <  1:480926‑M1/69‑1 (MQ=255)                                                                                                                                                              tCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATGGGCAACGCTGGGGGAGGCACAGACAAAACCCTACa                                                       >  1:493754/1‑235 (MQ=255)                                                                                                                                                               cACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGCCGCGACGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAg                                                                    >  1:289349/1‑221 (MQ=255)                                                                                                                                                                            cTCCCGGCAGGACCCCGCCGAAGGCCCCAGCCTGGGCCCTCAGCGCTTGGCGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAg                                                                                                     <  2:267817/175‑1 (MQ=255)                                                                                                                                                                               ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAg                                                                          <  2:666866/199‑1 (MQ=255)                                                                                                                                                                                               gAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGACAAGTGCCGCCCCCGCCGTTTACAGc                     >  1:329794/1‑236 (MQ=255)                                                                                                                                                                                                    ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAg                                                                                                     >  2:903738/1‑151 (MQ=255)                                                                                                                                                                                                    ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAg                                                                                                     <  1:903739/151‑1 (MQ=255)                                                                                                                                                                                                     cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTACAGCAAAAg                <  1:641170/235‑1 (MQ=255)                                                                                                                                                                                                      ccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑AAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTACAGCAAAAGGATCCCTTCCATGa  <  1:557006/236‑1 (MQ=21)                                                                                                                                                                                                           cTGGGGCCCCAGCGCTTGACGGGCATCCATGCCCGTCACC‑GCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTa                         <  1:427164/219‑1 (MQ=255)                                                                                                                                                                                                              gtgcggagggaggtgacgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTg                                                                                >  2:832587‑M1/26‑162 (MQ=255)                                                                                                                                                                                                                       cgcTTGTCGGCCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCTGCCTCCTGAAGTCGGGAAGATCAAGATCAAGATCAAGATCAAGATCAAGAGCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAAt                                                                                           <  2:836335/142‑1 (MQ=17)                                                                                                                                                                                                                        gcTTGACGGGCATCCATGCCCGTCACC‑GCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACaa                                                      >  2:427163/1‑177 (MQ=255)                                                                                                                                                                                                                        aggtgacgggcatCCATGCCCGTCACCTGCCTCCGCCAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCCACGCTg                                                                                >  2:15805‑M2/14‑152 (MQ=255)                                                                                                                                                                                                                             ccgggcatggATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGcct                                                                                                                                                                                  >  2:211188‑M1/11‑49 (MQ=255)                                                                                                                                                                                                                               gggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGa                                                                   <  2:389057‑M2/152‑1 (MQ=255)                                                                                                                                                                                                                               gggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGa                                                                   >  1:389058‑M2/7‑158 (MQ=255)                                                                                                                                                                                                                                 gcatCCATGCCCGTCACCTCCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAgg                                                                         >  2:1005311‑M2/5‑150 (MQ=255)                                                                                                                                                                                                                                   atCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTACAGCAAAAGGATCCCTTCCATGa  >  2:423238‑M2/3‑219 (MQ=255)                                                                                                                                                                                                                                   acccATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGAc                                                                  <  2:278484/153‑1 (MQ=255)                                                                                                                                                                                                                                    tCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGAGCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc                                                                                                 >  1:543333‑M2/2‑123 (MQ=255)                                                                                                                                                                                                                                      cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAg                                                                                                     <  2:156783/117‑1 (MQ=255)                                                                                                                                                                                                                                       ATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaag                                                                                                                                                                   >  2:242001‑M1/1‑54 (MQ=255)                                                                                                                                                                                                                                       ATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaag                                                                                                                                                                   <  1:242002‑M1/54‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                       ATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGTGCCGCCCCCGCCGTTTACAGCAAAAGGATCCCTTCCATGA  >  AE015451/2257896‑2258340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.