New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5684488 =	53 (0.860)	3 (0.050)	3/328	NT	5.4%	coding (2405/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	AE015451	5684611 =	55 (0.930)					coding (2282/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

CGGCTCGGCCACCTGCGGCTGCAACGGCGGGCGTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCA  >  AE015451/5684259‑5684716                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                     aactgatcgagcaggttggccaggccgtggaccgccgcctggccagcctgcatgaagacccgcaccatgccggccgcagcaagcgtgatccgcagttggtcgccagcttcctggcccatgccatggacatcctgctcgatgcagagacgttgttgtcgcgctggcagcaacagcccggccagcgtgacgctctggataacctgctcgaccagatgaccaccctggggcaCGCTgc                                                                                                                                                                                                                                 <  1:629148‑M1/6‑1 (MQ=255)     tCGGCCACCTGCGGCTGCAACGGCGGGCGTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTg                                                                                                                                                                                                                            >  1:1064603/1‑236 (MQ=255)             cTGCGGCTGCAACGGCGGGCGTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTg                                                                                                                                                                                                                                  <  2:444408/222‑1 (MQ=255)             cTGCGGCTGCAACGGCGGGCGTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTgaag                                                                                                                                                                                                                     <  1:459946/235‑1 (MQ=255)                  ggccaggccgtggaccgccgcctggccagcctgcatgaagacccgcaccatgccggccgcagcaagcgtgatccgcagttggtcgccagcttcctggcccatgccatggacatcctgctcgatgcagagacgttgttgtcgcgctggcagcaacagcccggccagcgtgacgctctggataacctgctcgaccagatgaccaccctggggcaCGCTgc                                                                                                                                                                                                                                 <  1:507667‑M1/6‑1 (MQ=255)                          ggcgggcgTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGcc                                                                                                                                                                                                                              >  1:590951/1‑213 (MQ=255)                              ggcgTGGCAACCCCAAGGTATCGGATAGGTCCATGGCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGcc                                                                                                                                                                                                                              <  1:483871/209‑1 (MQ=255)                                     cAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTg                                                                                                                                                                                                                                  <  2:752166/198‑1 (MQ=255)                                       aCCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGcc                                                                                                                                                                                           >  1:491955/1‑235 (MQ=255)                                           cAAGGTATCGGATAGGTCTATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCTCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      <  1:614082/236‑1 (MQ=255)                                           cAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      <  1:984811/236‑1 (MQ=255)                                                     gATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGcc                                                                                                                                                                            <  1:1090607/236‑1 (MQ=255)                                                        aGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCg                                                                                                                                                                                                                                     >  2:450123/1‑176 (MQ=255)                                                             cATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGTAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCgg                                                                                                                                                                                                        >  2:97340/1‑200 (MQ=255)                                                             cATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGc                                                                                                                                                                                                                                    >  2:749354/1‑172 (MQ=255)                                                                 tCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTg                                                                                                                                                                                                                                  <  2:515447/170‑1 (MQ=255)                                                                        gCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTgc                                                                                                                                                                                                                                 >  2:788552/1‑164 (MQ=255)                                                                          aGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCt                                                                                                                                                        <  1:406349/235‑1 (MQ=255)                                                                           gtggtgTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTc                                                                                                                                                       <  1:679894/235‑1 (MQ=255)                                                                                   aCCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCCGGCTGCcctc                                                                                                                                                                                        >  2:629147/1‑194 (MQ=255)                                                                                    ccGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTgg                                                                                                                                                                                            >  1:140474/1‑188 (MQ=255)                                                                                                ccaccaGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCca                                                                                                                                  >  1:865674/1‑235 (MQ=255)                                                                                                 caccaGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCCCGcacc                                                                                                                                                  >  1:53495/1‑217 (MQ=255)                                                                                                  accaGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAg                                                                                                                               >  1:1021415/1‑236 (MQ=255)                                                                                                     aGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCt                                                                                                                                                        >  1:580465/1‑208 (MQ=255)                                                                                                         cGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGcc                                                                                                                                   >  1:1030990/1‑225 (MQ=255)                                                                                                              gCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGt                                                                                                                    <  1:958038/235‑1 (MQ=255)                                                                                                              gCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGt                                                                                                                    <  1:865318/235‑1 (MQ=255)                                                                                                                   tGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGCCGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCa                                                                                                               <  1:55107/235‑1 (MQ=255)                                                                                                                        ccAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTg                                                                                                          <  1:731600/235‑1 (MQ=255)                                                                                                                           gggCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCGGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      <  2:932284/156‑1 (MQ=255)                                                                                                                                tGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAg                                                                                                    <  2:1064602/233‑1 (MQ=255)                                                                                                                                  gTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCg                                                                                                                                                      <  2:1072282/181‑1 (MQ=255)                                                                                                                                      agcagGTGGCGCAGACGGTCGACCAGCGCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGcaggcagg                                                                                                                                                                                                <  2:39208/135‑1 (MQ=255)                                                                                                                                           gTTGCGCAGACGGTCGACCAGCGCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCGTCAGGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCGCCTCCACAGCGCCATACa                                                                                                                                                                       >  2:922126/1‑155 (MQ=255)                                                                                                                                           atgcagagacgttgttgtcgcgctggcagcaacagcccggccagcgtgacgctctggataacctgctcgaccagatgaccaccctggggcaCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGcc                                                                                                                                                                                           <  1:394463‑M1/44‑1 (MQ=255)                                                                                                                                           atgcagagacgttgttgtcgcgctggcagcaacagcccggccagcgtgacgctctggataacctgctcgaccagatgaccaccctggggcaCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGcc                                                                                                                                                                                           >  2:394462‑M1/92‑135 (MQ=255)                                                                                                                                            ttGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTGCTCCACAGCGCCATAGAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGc                                                                                                             <  1:922127/212‑1 (MQ=255)                                                                                                                                            tggcgcAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGcc                                                                                                                                   <  2:1060975/188‑1 (MQ=255)                                                                                                                                             tGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCg                                                                                    <  1:601962/236‑1 (MQ=255)                                                                                                                                                      ggTGGACCAGCTCCTGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTg                                                                                        <  2:1048550/223‑1 (MQ=255)                                                                                                                                                         cGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTACGCCTGTCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGggtggt                                                                                              >  2:687935/1‑214 (MQ=255)                                                                                                                                                           aCCGGCTCCGGGCGCGGTGGAAGATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      <  2:226618/124‑1 (MQ=255)                                                                                                                                                                              gAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCggg                                                    >  1:602270/1‑235 (MQ=255)                                                                                                                                                                                atatCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCg                                                                                    <  1:105147/201‑1 (MQ=255)                                                                                                                                                                                 ttcccggCCCGGCCGCCGCTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTc                                                                                                                            <  2:380822/154‑1 (MQ=255)                                                                                                                                                                                    aagcgtgacgctctggataacctgctcgaccagatgaccaccctggggcaCGCTGCGCCTGGCTGAAGAAGCGGGAATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCgg                                                                                                                          >  1:250435‑M1/51‑159 (MQ=255)                                                                                                                                                                                     ccgcccgcccGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCa                                                                                                               <  2:385633/167‑1 (MQ=255)                                                                                                                                                                                        cccGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAgg                                                                                                   <  1:328448/178‑1 (MQ=255)                                                                                                                                                                                         ccGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGc                                                                                                             >  1:155797/1‑167 (MQ=255)                                                                                                                                                                                         ccGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTc                                                                                     >  2:1090493/1‑191 (MQ=255)                                                                                                                                                                                           ggCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGACTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCCGCGTGCCCCAGGGTGGTCATCTgg                                                                                       >  1:248169/1‑187 (MQ=255)                                                                                                                                                                                              cgccACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCCGAGCGTCACGCTGGCCGGGCTGTtg                                              >  1:189554/1‑225 (MQ=255)                                                                                                                                                                                                  ccTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGacaa                               <  1:382993/235‑1 (MQ=255)                                                                                                                                                                                                            gCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTctct                     <  1:97340/236‑1 (MQ=255)                                                                                                                                                                                                                gTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGGGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCAt                 >  1:309092/1‑236 (MQ=255)                                                                                                                                                                                                                   cAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCa                                        <  1:567576/210‑1 (MQ=255)                                                                                                                                                                                                                   cAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCg               <  1:220828/235‑1 (MQ=255)                                                                                                                                                                                                                      cAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGACAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGt                                                                                      <  1:1052913/161‑1 (MQ=255)                                                                                                                                                                                                                         ggCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGGCCAGCAACGCCTCGCACACGTCCTCCATCTGCCACAGGGCGGCCAGGGgcg                                                                                                                 >  2:237474/1‑131 (MQ=255)                                                                                                                                                                                                                              cATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      >  1:937443/1‑57 (MQ=255)                                                                                                                                                                                                                              cATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCcctcct                                                                                                                                                                                      <  2:937442/57‑1 (MQ=255)                                                                                                                                                                                                                              cATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTtg                                              >  1:268338/1‑193 (MQ=255)                                                                                                                                                                                                                                 gggCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTg                    <  2:1021414/216‑1 (MQ=255)                                                                                                                                                                                                                                  ggcaCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCca  <  2:1061770‑M1/229‑1 (MQ=255)                                                                                                                                                                                                                                  ggCCCGCTGCGCCTGGCGGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACg                          <  1:338514/209‑1 (MQ=255)                                                                                                                                                                                                                                   gCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGcc                                                       <  2:161464/179‑1 (MQ=255)                                                                                                                                                                                                                                     aCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAgcg                                     <  1:24188‑M1/194‑1 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                     CGGCTCGGCCACCTGCGGCTGCAACGGCGGGCGTGGCAACCCCAAGGTATCGGATAGGTCCATGTCCGGGTGCAGTGGTGTGACCGTATCGATGCCCACCAGGCCGGTGGCATCTGGCGCCAGGGCCTGGTCCAGCAGGTTGCGCAGACGGTCGACCAGCTCCGGGCGCGGTGGAATATCCTGCCCGGCCGCCACTTCGTCCAGCATGTCCAGCAAGGCTTCATGGGCCCGCTGCGCCTGGCTGAAGAAGCGGGCATCGGCAGGCAGGCTGCCCTCCTCCACAGCGCCATACAGGTCCAGCAACGCCTCGCACACGTCATCCATCTGCCACAGGTCGGCCAGGTGCGCAGCGTGCCCCAGGGTGGTCATCTGGTCGAGCAGGTTATCCAGAGCGTCACGCTGGCCGGGCTGTTGCTGCCAGCGCGACAACAACGTCTCTGCATCGAGCAGGATGTCCA  >  AE015451/5684259‑5684716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.