New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2524484 =	44 (0.710)	3 (0.050)	3/324	NT	7.7%	coding (1206/1686 nt)	PP_2213	putative acyl‑CoA synthetase
	?	AE015451	2524563 =	30 (0.510)					coding (1285/1686 nt)	PP_2213	putative acyl‑CoA synthetase

GGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGTTCGTGGTATTGGCCAGCGGCTACGCCGGCAGCGTCGAGCTGGAAGAA  >  AE015451/2524353‑2524793                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       ggCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGa                                                                                                                                                                                                                            <  2:463260/223‑1 (MQ=255)          caTCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTc                                                                                                                                                                                                                                   <  2:309112/207‑1 (MQ=255)                                ccGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATgg                                                                                                                                                                                                                  >  2:756699/1‑202 (MQ=255)                                  ggCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTc                                                                                                                                                                                                                                   <  2:1033485/183‑1 (MQ=255)                                              cccGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCgg                                                                                                                                                                  <  1:375959/236‑1 (MQ=255)                                                                gtggtggACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGt                                                                                                                                                                                 <  2:446499/203‑1 (MQ=255)                                                                           gCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATcacc                                                                                                                                                                          <  1:801761/199‑1 (MQ=255)                                                                           gCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATcacc                                                                                                                                                                          >  2:801760/1‑199 (MQ=255)                                                                                   aCGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCAt                                                                                                                                                 <  2:977781/216‑1 (MQ=255)                                                                                     gagcggCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCgg                                                                                                                                                                  <  1:307994/192‑1 (MQ=255)                                                                                              gCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCg                                                                                                                                                                                                                       >  2:619677/1‑135 (MQ=255)                                                                                                    cagccagGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGt                                                                                                            <  1:460932/236‑1 (MQ=255)                                                                                                     agccagGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTg                                                                                                           >  1:1104950/1‑236 (MQ=255)                                                                                                            cATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAgg                                                                                                    <  1:535487/236‑1 (MQ=255)                                                                                                                   gCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCGTTCGATGTGGAAGGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGc                                                                                                >  2:1073989/1‑233 (MQ=255)                                                                                                                   gCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGt                                                                                             >  1:451932/1‑236 (MQ=255)                                                                                                                   gCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGt                                                                                             >  1:1124606/1‑236 (MQ=255)                                                                                                                             gTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGcgacga                                                                                                                                                                                    >  2:1133809/1‑139 (MQ=255)                                                                                                                                        ccgctgaggtagtacttgccgacgaaggctttggtcggcaggccgtggtaaccgccgaaccagcacagcggcgacACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGc                                                                                                                                                    <  1:771166‑M2/85‑1 (MQ=255)                                                                                                                                        ccgctgaggtagtacttgccgacgaaggctttggtcggcaggccgtggtaaccgccgaaccagcacagcggcgacACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGc                                                                                                                                                    >  2:771165‑M2/76‑160 (MQ=255)                                                                                                                                             GTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCgacgac                                                                                                                                                                                   <  1:575896‑M1/124‑1 (MQ=255)                                                                                                                                                  ggTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCgtgt                                                                                                                                                         >  2:965501/1‑145 (MQ=255)                                                                                                                                                  ggTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCgt                                                                                                                                                           <  2:863858/143‑1 (MQ=255)                                                                                                                                                      cggcggTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTc                                                                                                                                                                                                                                   >  2:919120/1‑67 (MQ=255)                                                                                                                                                      cggcggTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTc                                                                                                                                                                                                                                   <  1:919121/67‑1 (MQ=255)                                                                                                                                                           tgacgagggctttggtcggcaggccgtggtaaccgccgaaccagcacagcggcgacACTGTCGAGCTGACCCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCgg                                                                                                                                                                  <  1:1077351‑M2/71‑1 (MQ=255)                                                                                                                                                           gTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAg                                                     >  1:858848/1‑236 (MQ=255)                                                                                                                                                                 gcGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCt                                                                                                                                                                                                       <  1:229693/83‑1 (MQ=255)                                                                                                                                                                     cttGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGtgc                                               >  2:646792/3‑230 (MQ=255)                                                                                                                                                                       tGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTgg                                                                                                                                        <  2:2360/141‑1 (MQ=255)                                                                                                                                                                          cGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATc                                                                                                                          <  2:958752/152‑1 (MQ=255)                                                                                                                                                                           gACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAAcc                                                                                                                                                                                                                         <  2:631700/56‑1 (MQ=255)                                                                                                                                                                               caaGCCCTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGt                                                 <  1:227542/219‑1 (MQ=255)                                                                                                                                                                                           ggCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCcggcg                                                                                                              >  2:247569/1‑147 (MQ=255)                                                                                                                                                                                                     gccTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTAcc                                                                                                                                                             <  2:378721/89‑1 (MQ=255)                                                                                                                                                                                                          cgcggcgacACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGccc                                                                                <  2:591261‑M2/153‑1 (MQ=255)                                                                                                                                                                                                             tgcgacACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGa                                                                                                      >  1:319558‑M2/7‑137 (MQ=255)                                                                                                                                                                                                              gcgccACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGt                                                 <  2:313402‑M2/184‑1 (MQ=255)                                                                                                                                                                                                              gcgacACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGTTCGTGGTATTGGCCAGCGGCTACGCCGGCAGCGTCGAGCTGgaagaa  >  1:1000964‑M2/6‑236 (MQ=255)                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       GGCCTGCAGCATCCGGTGCACCTGGGTTCTGCCGGCTATGCCATCCCCGGCCACCGCATCGTGGTGGTGGACGAGCAAGGTAACGAACTGCCAGCCGGCCAGCCAGGCATCCTCGCCGTTGACCGTGAGCAGTCGCCGCTGTGCTGGTTCGGCGGTTACCACGGCCTGCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGCGGCGACACTGTCGAGCTGAACCCGGATGGCAGCATCAGCTTCGTTGGCCGTAGCGACGACGTGATCACCACCTCCGGTTACCGTGTGGGGCCATTCGATGTGGAAAGCGCGTTGATCGAGCACCCGGCGGTGATCGAGGCAGCGGTGATCGGCAAGCCCGACCCGGAGCGTACCGAGCTGATCAAGGCGTTCGTGGTATTGGCCAGCGGCTACGCCGGCAGCGTCGAGCTGGAAGAA  >  AE015451/2524353‑2524793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.