New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5036742 =	NA (NA)	3 (0.050)	3/326	NT	NA	coding (233/336 nt)	PP_4442	transposase
	?	AE015451	5036808 =	NA (NA)					coding (299/336 nt)	PP_4442	transposase

ACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAG  >  AE015451/5036776‑5036950                                 |                                                                                                                                               accccAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAg  <  2:288272/172‑1 (MQ=1)              gtgcTGGGTTTGCCATGGGTGCGCGTTGGTGCAGTCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATgcc                                       <  2:268469/122‑3 (MQ=0)                                 |                                                                                                                                               ACTCCAGGCGTTGGTACTGGGTTTGCCATGGCTGCGCGTTGGTGCAGGCGGTGTGATCAGCATGCTGTAATCGCCGGCCATTTGACCGGTCTGTTTGTCGTCGTTTCGGGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCCCAATCTCGACCAGATGACTCCGGAACAG  >  AE015451/5036776‑5036950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.