Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	486246	486449	204	19 [18]	[18] 21	[apaG]	[apaG]

CTGCATGGTGCCAACGCGGGTGCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCC  >  AE015451/486024‑486357                                                                                                                                                                                                                              |                                                                                                                 cTGCATGGTGCCAACGCGGGTGCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGtt                                                                                                    <  1:773213/236‑1 (MQ=255)  tGCATGGTGCCAACGCGGGTGCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTc                                                                                                   >  1:1103094/1‑236 (MQ=255)            cAACGCGGGTGCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAgg                                                                                            >  2:461840/1‑233 (MQ=255)                      gCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGt                                                                                    >  2:715470/1‑231 (MQ=255)                         gatgaCGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCacgacg                                                                             <  1:772890/235‑1 (MQ=255)                                          tgTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACAGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATa                                                            <  1:620579/235‑1 (MQ=255)                                                  tgGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCgg                                                        <  2:578590/231‑1 (MQ=255)                                                                                      aCCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCaata                <  1:461841/235‑1 (MQ=255)                                                                                       ccACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCaata                <  2:1103093/234‑1 (MQ=255)                                                                                            ccGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACCGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACAt                                             <  1:37587/200‑1 (MQ=255)                                                                                                cgcagcGTACTTCCTCTACCTCGCCGTCACCGTTGCTGATCAGCCAGTGGCGAGACAGCAACTTGTCACTGAGCGAGCCGTTGTTCTTCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTct                                                                                                                 <  2:1050703/128‑2 (MQ=255)                                                                                                   cgcgTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGcc  <  1:715471/236‑1 (MQ=255)                                                                                                         cTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCtt                                  <  2:879505/198‑1 (MQ=255)                                                                                                              tctACCTCGCCGTCACCGTTGGTGATCAGCCAGGGGCGCGACAGCAACTTGGCAATGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAAc                          <  1:22248/201‑1 (MQ=255)                                                                                                                   cgcGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGc            <  1:166836/208‑1 (MQ=255)                                                                                                                   cTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATg                                            <  2:891210/178‑1 (MQ=255)                                                                                                                            aCCGTGGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGc            <  2:550073/201‑1 (MQ=255)                                                                                                                              ggTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCt                                                                           <  2:41769/135‑1 (MQ=255)                                                                                                                                               tGGCGCGACAGTAATTTTGAACTGAGCTAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGCAAGCGAAGCGACTGTTTCCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTTGATTTGACAGCGGGGGTCg                                                  <  2:548397/144‑1 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                 CTGCATGGTGCCAACGCGGGTGCTGATGACGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGCGACAGCAACTTGGCACTGAGCGAGCCGTTGTTCTGCACGGTAATGGTGTAGGCGAAAGCGAAGCGACTGTTTTCGGGGTCGGATTGTTCTTTCAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCC  >  AE015451/486024‑486357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑