Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	486246	486449	204	19 [18]	[18] 21	[apaG]	[apaG]

GGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTG  >  AE015451/486380‑486667                                                                       |                                                                                                                                                                                                                          ggTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGtt                                                                                                                                    >  1:474443/1‑158 (MQ=255)       cGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGgcggcg                                                 >  1:108491/1‑235 (MQ=255)       cGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGgcggcg                                                 >  1:356347/1‑235 (MQ=255)        gggCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGtt                                                                                             >  2:618476/1‑190 (MQ=255)                ggggggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCcag                                         >  2:415242/1‑234 (MQ=255)                       gttgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATggcgg                                                   >  2:799610/1‑217 (MQ=255)                         tgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCa                                                                                                                     >  2:644617/1‑149 (MQ=255)                                 ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCGCGATg                                                       >  1:641305/1‑203 (MQ=255)                                 ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCAAGAAGGCTGCCAGGTCGAGCTGTTGAGGGCGCAGGCTGCCATCAACGCcagcag                                                               >  1:883723/1‑195 (MQ=255)                                 ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGCCGCACAGGGTTTGAGGGTTGTGCGATCCCTTGTGgcgcgc                                                                                                                                                                                    >  2:718789/1‑78 (MQ=25)                                  cGGCCTATTCGCGGGTAAACCCACTCCTACAAGGGGTCGAACAGGATTTGCGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGAACGAAGTCTGCCAGGTCGAGCTGTTCAGGGAGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCcagca                                       >  2:1047812/1‑218 (MQ=255)                                       tctTCGCGGGTAAACCCGCTCCTACACGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCAAGGCGCACGAAGGCTGCCAGGTCGCGCTGTTCAGGGCGCAGGCGGCCATCAAAGCcagc                                                                 >  2:377242/1‑187 (MQ=255)                                       tctTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCGTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCa                                                                                                                     >  2:425340/1‑135 (MQ=255)                                           cgcgGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGcc                                                                                >  2:894204/1‑167 (MQ=255)                                                  aaaCCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCAt                             >  2:818856/1‑212 (MQ=255)                                                      ccGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTg  >  1:972760/1‑235 (MQ=255)                                                           ccTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGt                                                                                                      >  2:437767/1‑130 (MQ=255)                                                           ccTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAg                                                                                   >  2:5217/1‑149 (MQ=255)                                                                       cGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGgc                                                                                                                        >  2:263554/1‑100 (MQ=255)                                                                       cGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGgc                                                                                                                        <  1:263555/100‑1 (MQ=255)                                                                       cGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGATGCGCAGGGTCTTGCGGCGCt   >  1:646951/1‑217 (MQ=255)                                                                       |                                                                                                                                                                                                                          GGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTG  >  AE015451/486380‑486667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑