Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2039438	2039692	255	19 [18]	[18] 19	[rffE]–[PP_1812]	[rffE],[PP_1812]

CAGCCAGCACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTA  >  AE015451/2039224‑2039581                                                                                                                                                                                                                      |                                                                                                                                                 cagccagcACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACa                                                                                                                            <  1:359139/236‑1 (MQ=255)   gccagcACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAg                                                                                                                           <  1:950357/235‑1 (MQ=255)                 gATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACa                                                                                                                            <  1:22697/220‑1 (MQ=255)                    gCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGc                                                                                                                                                  <  1:369309/195‑1 (MQ=255)                                       gtCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCt                                                                                      <  1:215559/236‑1 (MQ=255)                                        tCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAggg                                                                                                            <  1:597001/213‑1 (MQ=255)                                                            ccGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTAcc                                                                                                                                   <  2:268732/170‑1 (MQ=255)                                                                             cAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGAGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAggg                                                                                                            <  1:875706/176‑1 (MQ=255)                                                                                 tCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCtt                                                                                         <  2:922142/191‑1 (MQ=255)                                                                                      ttCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATc                                                                                              <  2:658820/181‑1 (MQ=255)                                                                                      ttCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCa                                         <  1:24136/234‑1 (MQ=255)                                                                                                 tGCCGAACAGCTCCAGTACCTGATCGGGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGc                                                                        <  2:1017322/192‑1 (MQ=255)                                                                                                                             cATTTGCGGGTGCTGTCCGGTGACGCACACGCGGGCTTCGAAGCGTCTGTCCTGCGCCAGTTGCAGTGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTa  <  1:74333/234‑1 (MQ=255)                                                                                                                                  gCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCa                                                                                                    <  2:224319/131‑1 (MQ=255)                                                                                                                                   cgggTGCGGGCCGGTGACGCACAGGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAAc                                                                                                                             <  2:217795/103‑1 (MQ=255)                                                                                                                                                                cTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCACCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGc                                                                                       <  2:1111171/114‑1 (MQ=255)                                                                                                                                                                      aGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCtt   <  2:418096/192‑1 (MQ=255)                                                                                                                                                                         ggCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAg                                           <  2:622030/149‑1 (MQ=255)                                                                                                                                                                                                     cGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAg                                                                                                              <  2:1022989/54‑1 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                 CAGCCAGCACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTA  >  AE015451/2039224‑2039581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑