Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2039438	2039692	255	19 [18]	[18] 19	[rffE]–[PP_1812]	[rffE],[PP_1812]

GGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGC  >  AE015451/2039625‑2039911                                                                     |                                                                                                                                                                                                                           ggcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCGCAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGTTAACCATTCGCCGGGGTAGTTg                                                                                                 >  1:813887/1‑192 (MQ=255)               aTGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGtt                                       >  1:720236/1‑236 (MQ=255)                tGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGGGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTgggaa                                                                                             >  1:175781/1‑179 (MQ=255)                   ccGGGCAGTGGTGGGCGGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCt                                                                       >  2:394996/1‑200 (MQ=255)                   ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGa                                                   >  2:416783/1‑220 (MQ=255)                   ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGGGAAGTTGAGCGGTTTGCTGACCGATTCGGTAACCATTCGCCggggga                                                                                                     >  2:139661/1‑168 (MQ=255)                     gggCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGa                                 >  1:733320/1‑236 (MQ=255)                         aGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGaaaa                              >  1:492632/1‑235 (MQ=255)                             gtggGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAgg                                                                                                                                                                                                                            <  1:908012/41‑1 (MQ=255)                                    gTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGggttgg                                                               >  2:559138/1‑191 (MQ=255)                                        gTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCGGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGAGTCGGTAACCATTCGCCGGGGTa                                                                                                     >  2:386314/1‑149 (MQ=255)                                          aTCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAggg                                                                                                                                                                                                               >  2:908011/1‑41 (MQ=255)                                                    cGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTAt                                                                                            >  2:341972/1‑146 (MQ=255)                                                    cGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTAt                                                                                            <  1:341973/146‑1 (MQ=255)                                                    cGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATgc  >  1:1075164/1‑236 (MQ=255)                                                    cGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGGTGGTTgc                                                           >  1:675712/1‑179 (MQ=255)                                                           ttGGCTACAGGCACAAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtgt                                                                                         <  1:656162/142‑1 (MQ=255)                                                           ttGGCTACAGGCACAAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtgt                                                                                         >  2:656161/1‑142 (MQ=255)                                                                     gCACAAGGCCAGGGCCTTGTTCGTTCAgggccgggc                                                                                                                                                                                         >  2:318057/1‑36 (MQ=255)                                                                     |                                                                                                                                                                                                                           GGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGC  >  AE015451/2039625‑2039911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑