New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	495066 =	78 (1.090)	8 (0.120)	7/328	NT	9.7%	coding (968/999 nt)	PP_0408	conserved exported protein of unknown function
	?	AE015451	495094 =	76 (1.140)					coding (940/999 nt)	PP_0408	conserved exported protein of unknown function

AAAAACTGGTGATGGTCGCTGCACAGACCCCTGCACGGGTGGAGCAGGACCTGGAAAGCCTGGCCCCAACCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/495306‑495066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttccgccgCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTTTCCAGGTCCTGCTCCACCCGTGCAGGGGTCTGTGCAGCGACCATCACCAGTTTTTGTACCTGTGGTGGCTGCT  >  AE015451/495094‑495324                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAAACTGGTGATGGTCGCTGCACAGACCCCTGCACGGGTGGAGCAGGACCTGGAAAGCCTGGCCCCAACCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTC                                                                                                                                                                                                                                              >  1:1201671/1‑236   AAACTGGTGATGGTCGCTGCACAGACCCCTGCACGGGTGGAGCAGGACCTGGAAAGCCTGGCCCCAACCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCG                                                                                                                                                                                                                                            >  1:924891/1‑236                            CCCCCGCACGGGTGGAGCAGCACCTGGAAAGCCTGGCCCCAGCCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCA                                                                                                                                                                                                                     <  1:207915/234‑1                                        TGGAGCAGGACCTGGAAAGCCTGGCCCCAACCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAAT                                                                                                                                                                                                         <  2:1201666/234‑1                                                                                                             GCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCT                                                                                                                                                                                   <  1:474723/187‑1                                                                                                             GCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCT                                                                                                                                                                                   >  2:474718/1‑187                                                                                                                                                         aacCGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAAT                                                                                                                                                                                                         <  2:384738/118‑1                                                                                                                                                                          CCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTT                                                                                                                                                                                                                                  <  1:977195/79‑1                                                                                                                                                                          CCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTT                                                                                                                                                                                                                                  >  2:977190/1‑79                                                                                                                                                                                      ATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTTTCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCG                                                                                                                                           >  2:991575/1‑154                                                                                                                                                                                                                                         gtgCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGC                                                                                                                                <  2:199539/111‑1                                                                                                                                                                                                                                         GTTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTTTCCAGGTCCTGCTCCACCCGT                                                      <  2:216879/188‑1                                                                                                                                                                                                                                          TTCCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTT                                                                           <  2:608367/166‑1                                                                                                                                                                                                                                            CCGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATGGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTTTCCAGGTCCTGCTC                                                             <  2:331354/178‑1                                                                                                                                                                                                                                             CGCCGCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTTTCCAGGTCCTGCTCCACCCGTGCAGGGGTCTGTGCAGCGACCATCACCAGTTTTTGTACCTGTGGTGGCTGCT  <  1:1234042/236‑1                                                                                                                                                                                                                                                 GCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTG                                                                                                      <  2:439177/132‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAAACTGGTGATGGTCGCTGCACAGACCCCTGCACGGGTGGAGCAGGACCTGGAAAGCCTGGCCCCAACCTTGAAGGTACCCACGGCCGATATCTACTACGCCACCCGCAGCGCTGACCGCAACGCAGCCCAGCAACGGCTGCAGGCCAGCAAACGGCAGAAGGATAGCCAGTACCGACAATTGTCATTGATTGCCATGCCAGCAAACAAAGCGGCGGAACAAGAGCAATTGTTCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/495306‑495066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttccgccgCTTTGTTTGCTGGCATGGCAATCAATGACAATTGTCGGTACTGGCTATCCTTCTGCCGTTTGCTGGCCTGCAGCCGTTGCTGGGCTGCGTTGCGGTCAGCGCTGCGGGTGGCGTAGTAGATATCGGCCGTGGGTACCTTCAAGGTTGGGGCCAGGCTTTCCAGGTCCTGCTCCACCCGTGCAGGGGTCTGTGCAGCGACCATCACCAGTTTTTGTACCTGTGGTGGCTGCT  >  AE015451/495094‑495324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.