New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 1042953 = | 69 (0.970) | 4 (0.060) | 4/330 | NT | 6.0% | coding (763/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
? | AE015451 | 1043012 = | 61 (0.910) | coding (822/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
GGTTGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1043190‑1042953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccgcgcGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCGCACTACACCGACAGTGGGTATATCCGCCTGAGCCT > AE015451/1043012‑1043242 GGTTGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGC < 2:72744/236‑1 TTGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTGCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCTGCGC < 1:703968/236‑1 GCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCCCGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGC < 1:584140/198‑1 gGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCG < 2:155699/137‑1 ATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTC < 1:706511/147‑1 ATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTC > 2:706506/1‑147 GGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAA < 1:614553/133‑1 GGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCGCACTACACCGACAGTGGGTATATCCGCCTGA > 2:563130/1‑236 CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCGCACTACACCGACAGTGGGTATATCCGCCTGAGCCT > 1:885464/1‑236 CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTC > 1:1046154/1‑105 CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTC < 2:1046149/105‑1 CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCC > 2:384544/1‑103 GGTTGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1043190‑1042953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccgcgcGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCGCACTACACCGACAGTGGGTATATCCGCCTGAGCCT > AE015451/1043012‑1043242 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |