New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1892525	76 (1.060)	6 (0.090)	5/330	NT	7.5%	intergenic (+35/‑60)	PP_1697/PP_1698	transcriptional regulator, GntR family/Major facilitator family transporter
	?	AE015451	= 1892529	76 (1.130)					intergenic (+39/‑56)	PP_1697/PP_1698	transcriptional regulator, GntR family/Major facilitator family transporter

CGCTGTGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1892282‑1892525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgccgtgGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGCAAGCGGCCATGCACCGCGTCGACCGCTTCGGCGGTCAGGGTTTCTTCGGCGTAGGCGA  <  AE015451/1892529‑1892300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGCTGTGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGCCCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCT                                                                                                                                                                                                                                                <  1:200935/236‑1 CGCTGTGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCT                                                                                                                                                                                                                                                <  1:650928/236‑1    TGTGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCG                                                                                                                                                                                                                                             >  1:883526/1‑236      TGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGC                                                                                                                                                                                                                                            >  1:931868/1‑235         GGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCC                                                                                                                                                                                                                                           >  1:1013064/1‑233                                            CGCCGAAGCGGTCGACGCGGTGCCTGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCT                                                                                                                                                                                                                                                <  2:877932/193‑1                                                                        CGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCG                                                                                                                                                                                                                                          >  1:407298/1‑171                                                                                                               ATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGa                                                                                                                                                                                                                                            >  2:787888/1‑129                                                                                                                                                                                         CCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGC                                                            <  1:189109/232‑1                                                                                                                                                                                               CCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGGTTGCCGGCGTAATCGCGGGCCAGGCGCTCGAT                                                                                              >  2:189106/1‑192                                                                                                                                                                                                    TCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCG                                                                                                                                           >  1:1005665/1‑142                                                                                                                                                                                                          gTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCT                                                                                                                                                                                                                                                <  2:1120919/34‑1                                                                                                                                                                                                                         GCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGC                                                               >  1:566408/1‑197                                                                                                                                                                                                                         GCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAA                                                                                                                                                                      <  1:262951/94‑1                                                                                                                                                                                                                         GCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAA                                                                                                                                                                      >  2:262947/1‑94                                                                                                                                                                                                                          CTTCACCCTTCACCTGTCTGCGC                                                                                                                                                                                                                                            >  2:623901/1‑23                                                                                                                                                                                                                                             GCGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGGTGCAGCAAGCGG                                                      >  1:238866/1‑186                                                                                                                                                                                                                                              CGCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGCAAGCGGCCATGCACCGCGTCGACCGCTTCGGCGGTCAGGGTTTCTTCGGCGTAGGC    <  1:573923/235‑1                                                                                                                                                                                                                                               GCCGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGCAAGCGGCCATGCACCGCGTCGACCGCTTCGGCGGTCAGGGTTT                 >  1:231404/1‑221                                                                                                                                                                                                                                                 CGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGCAAGCGGCCATGCACCGCGTCGACCGCTTCGGCGGTCAGGGTTTCTTCGGCGTAGGCGA  <  2:622243/234‑1                                                                                                                                                                                                                                                 CGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGC                                                            <  1:975758/176‑1                                                                                                                                                                                                                                                 CGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGC                                                            >  2:975753/1‑176                                                                                                                                                                                                                                                 CGTGGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAAT                                                                                                                 >  2:267739/1‑123                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGCTGTGCGGTCAGGTGGTCGCCTACGCCGAAGAAACCCTGACCGCCGAAGCGGTCGACGCGGTGCATGGCCGCTTGCTGCAACTGCCGGCCGACAGCCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1892282‑1892525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgccgtgGCAGCACGGCGCAGACAGGTGAAGGGTGAAGCGACCGGTTTAACGAATGTCGATGCGGTAGCGGAAGTGCTGCGCATGGCCGCGCGAGCGGCGCCATTCCAGAGGTTTGCCGGCGTAATCGCGGGCCAGGCGCTCGATCACGACCACCGGGCTGTCGGCCGGCAGTTGCAGCAAGCGGCCATGCACCGCGTCGACCGCTTCGGCGGTCAGGGTTTCTTCGGCGTAGGCGA  <  AE015451/1892529‑1892300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.