New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2084102 =	51 (0.710)	6 (0.090)	6/332	NT	11.1%	intergenic (+6/+23)	PP_1862/PP_1863	conserved membrane protein of unknown function/Transcriptional regulator, LysR family
	?	AE015451	2084123 =	48 (0.710)					intergenic (+27/+2)	PP_1862/PP_1863	conserved membrane protein of unknown function/Transcriptional regulator, LysR family

ACCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2084343‑2084102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccccaGATCACTTGAAACCCTCAACGATGTAGTCGGCCATGCAGTCGGTGATTGGCGAGGGGGTCTGCGTACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAA  >  AE015451/2084123‑2084318                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGATTCAAGAGATCTGGGGCCGAAAATCG                                                                                                                                                                                                            >  2:252323/1‑236         AAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCG‑AAATCGGCCCCA                                                                                                                                                                                                      >  2:439289/1‑233             CTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCAGATCAC                                                                                                                                                                                                <  1:662745/236‑1                                                                                                                  GCTGCCGCCGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCAGATCACTTGAAACCCTCAACGATGTAGTCGGCCATG                                                                                                                                                                  <  2:471290/165‑1                                                                                                                                   TGGCCAATGTAATGCGGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCAGATCACTTGAAACCCTCAACGATGTAGTCGGCCATGCAGTCGGTGATTGGCGA                                                                                                                                                 <  2:271866/165‑1                                                                                                                                                       CGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCAGATCACTTGACACCCTCAACGATGTAGTC                                                                                                                                                                         <  2:1175005/121‑1                                                                                                                                                       CGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCAGATCACTTGAAACCCTCAACGATGTAGTC                                                                                                                                                                         >  1:1175010/1‑121                                                                                                                                                                                                                GGTTTCAAGTGACCTGGGGCCGAAAATCGGCCCCAGATCACTTGAAACCCCCAAC                                                                                                                                                                                  >  2:455974/1‑55                                                                                                                                                                                                                                           CGGCCCCAGATCACTTGAAACCCTCAACGATGTAGTCGGCCATGCAGTCGGTGATTGGCGAGGGGGTCTGCGTACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAA  <  2:630651/204‑1                                                                                                                                                                                                                                               CCCAGATCACTTGAAACCCTCAACGATGTAGTCGGCCATGCAGTCGGTGATTGGCGAGGGGGTCTGCGTACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCT                                      <  1:548048/164‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGTACGCAGACCCCCTCGCCAATCACCGACTGCATGGCCGACTACATCGTTGAGGGTTTCAAGTGATCTGGGGCCGAAAATCGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2084343‑2084102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccccaGATCACTTGAAACCCTCAACGATGTAGTCGGCCATGCAGTCGGTGATTGGCGAGGGGGTCTGCGTACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAA  >  AE015451/2084123‑2084318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.