New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2130415 =	86 (1.200)	4 (0.060)	3/332	NT	5.1%	coding (1784/2496 nt)	fimD	Type 1 pili subunit FimD
	?	AE015451	2130513 =	68 (1.000)					coding (1686/2496 nt)	fimD	Type 1 pili subunit FimD

GCCTCACAATCGTTGACCGACCGTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2130560‑2130415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgctcagGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCCAGGCTCTGGTGGACCGAGGCCTCCAGGCGGCTGCGGCGACTGCCGCTGAACGTAGTGT  >  AE015451/2130513‑2130742                                                                                                                                                                                                                                                                                                                                                                                          GCCTCACAATCGTTGACCGACCGTTACGGCAATGATCGTCAGCTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGGCCAAA                                                                                                                                                                                                                                  <  2:1037563/152‑1                                                                                                            GCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCC                                                            >  1:1054016/1‑211                                                                                                            GCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGC                                                                                                                                                                                        <  1:658412/87‑1                                                                                                            GCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGC                                                                                                                                                                                        >  2:658407/1‑87                                                                                                                                        GCCACGCTCGGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCC                                                            <  2:765467/183‑1                                                                                                                                          CACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCCAGGCTCTGGTGGACCGAGGCCTCCAGGCGGCTGCGGCGACTGCCGCTGAACGTA      >  1:1127918/1‑235                                                                                                                                           ACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCCAGGCTCTGGTGGACCGAGGCCTCCAGGCGGCTGCGGCGACTGCCG               <  2:653689/225‑1                                                                                                                                             GCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCCAGGCTCTGGTGGACCGAGGCCTCCAGGCGGCTGCGGCGACTGCCGCTGAACGTAGTGT  <  1:1037397/236‑1                                                                                                                                                                                                                                                                                                                                                                                          GCCTCACAATCGTTGACCGACCGTTACGGCAATGATCGTCAGTTTGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2130560‑2130415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgctcagGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCTGGGTATTGAAGTTGAACTGGTATTGCCGTTGGGTGGCATTGCTGCGCCAGTAGTCCTGTTGCGACAGCGTCAGGGTCAGCGAGCTGGTCCTGCCCAGGCTCTGGTGGACCGAGGCCTCCAGGCGGCTGCGGCGACTGCCGCTGAACGTAGTGT  >  AE015451/2130513‑2130742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.