| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 2412887 | 54 (0.760) | 10 (0.150) | 7/330 | NT | 19.1% | intergenic (+151/‑270) | rlmM/PP_2114 | Ribosomal RNA large subunit methyltransferase M/transposase |
| ? | AE015451 | 2414813 = | 34 (0.510) | coding (11/198 nt) | PP_2115 | conserved protein of unknown function | |||||
AGATCAGGGTGTCGATTGCCTGCAAGCAGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/2412645‑2412887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCGTCGCGCTATGCGCGACAATAGCGATCATTTTCGGAGCCCCCCATGACCGATTTCACCCCCGACGCC > AE015451/2414813‑2415045 AGATCAGGGTGTCGATTGCCTGCAAGCAGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGTGGTTGCGAAGGGAGGTGACGGGCATGGATG > 1:388108/1‑236AGATCAGGGTGTCGATTGCCTGCAAGCAGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGAT > 1:1006203/1‑235 TGCAAGCAGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCATGTCGTTCTGCGTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGGGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTT > 2:718411/1‑231 AGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTac < 1:198496/236‑3 CGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTac < 1:850513/226‑3 AGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTTAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTCCCTT < 1:715933/206‑1 GCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAG < 1:155864/236‑1 GCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAG < 1:766806/226‑1 TGCGTCTGCGTCTGCGTCTGCTTTTGCTGTGGGTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTCCCTTC < 2:35634/138‑1 CTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAA < 2:943886/152‑1 TAGTTCAGGCGAGGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAG < 1:598634/218‑1 gtTTGCGACTTCGGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCACCTCCCTT < 2:307857/72‑1 ATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCGTCGCGCTATGCGCGACAATAGCGATCATTTTCGGAGCCCCCCATGACCGATTTCACCCC > 1:464752/1‑236 CCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCG‑‑‑‑‑‑AAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCGTCGCGCTATGCGCGACAATAGCGATCATTTTCGGAGCCCCCCATGACCGATTTCACCCCCGACGCC < 1:542401/234‑1 CGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAG < 2:905497/85‑1 TCACCTGCCTTCGCAAGGCATGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCG < 1:369006/170‑1 CACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCG‑‑‑‑‑‑AAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCGTCGCGCTATGCGCGACAATAGCGATCATTTTCGGAGC > 2:1244785/1‑200 AGATCAGGGTGTCGATTGCCTGCAAGCAGCTGTACCACGACCGCGAGGAAGTGACGTGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/2412645‑2412887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCGAGATCAAGATCAAGATCGAGATCAAGAGCGCTGGGTTTGAAAGCCGTGCTTGGACCGCGTCGCGCTATGCGCGACAATAGCGATCATTTTCGGAGCCCCCCATGACCGATTTCACCCCCGACGCC > AE015451/2414813‑2415045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |