New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3409687 = | 67 (0.940) | 4 (0.060) | 4/322 | NT | 5.9% | intergenic (‑253/‑283) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
? | AE015451 | 3409701 = | 66 (1.010) | intergenic (‑267/‑269) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
GAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTGGTATGCAACACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3409912‑3409687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcgccggccGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCA > AE015451/3409701‑3409928 GAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTGGTATGCAACACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCC < 2:465790/222‑1 TGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTGGTATGCAACACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAG < 1:1097854/236‑1 CTGGTATGCAACACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCCGTGTCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGAg > 2:1035875/1‑120 cCACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGT < 1:374087/167‑1 CACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGGGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTG > 2:853468/1‑180 GGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAAC > 2:398494/1‑142 GCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCC < 1:1064983/204‑1 GCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGC < 2:340917/69‑1 CGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCA > 1:549093/1‑236 CCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCGGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCC < 2:107790/184‑1 GCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGG < 1:543200/51‑1 GAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTGGTATGCAACACCACTGCCAGGCCCATCGCTGCCAGGGCGATCATGCCGCAGAAGGCAAGGATACGGCCGGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3409912‑3409687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcgccggccGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCA > AE015451/3409701‑3409928 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |