| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4244769 | 78 (1.090) | 3 (0.040) | 3/334 | NT | 3.9% | coding (252/1191 nt) | aruH | Arginine‑‑pyruvate transaminase AruH |
| ? | AE015451 | = 4244795 | 74 (1.090) | coding (226/1191 nt) | aruH | Arginine‑‑pyruvate transaminase AruH | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4244578‑4244769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgcCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTGTGGCGCCAAGGTGGTGCCGGTACCGGTCAAGCCCGAGAATGG < AE015451/4244795‑4244572 TCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCT > 1:1092987/1‑188TCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCT < 2:1092982/188‑1 AATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCCAGGCCATCGCCAACCGTCACC > 1:1022715/1‑85 gcCCCCCGCCAGCCCCGTCCCCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGT < 1:115898/181‑1 GGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCT < 1:354388/48‑1 CGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGG > 2:115895/1‑111 CTGCGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCC < 2:390574/109‑1 TGCGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTGTGGCGCCAAGGTGGTGCCGGTACCGGTCAAGCCCGAGAATGG < 2:939811/229‑1 TGCGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTG > 1:1241371/1‑187 CGCCAGGCCATCGCCAACCGTCGCCGG < 2:118801/27‑1 CGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTGTGGCGCCAAGGTGGTGCCGGTACCGGTCAAGCCCGAGAATGG < 2:862910/227‑1 CGCCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTGTGGCGCCAAGGTGGTGCCGGTACCGGTCAAGCCCGA > 1:1016448/1‑221 TCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4244578‑4244769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgcCAGGCCATCGCCAACCGTCACCGGCAGCGCAGCGGCCAGGCGGTGAGCGCCGACCAGGTGACGGTGCTGGCGGGGGCCCAGTGCGCATTGTACTGCGTGGCCCAGTGCATACTCGACCCAGGCGATGAGGTGATCGTTGCCGAACCGATGTATGTCACCTACGAGGCCGTGTTCGGCGCCTGTGGCGCCAAGGTGGTGCCGGTACCGGTCAAGCCCGAGAATGG < AE015451/4244795‑4244572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |