New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4647493 | 77 (1.080) | 5 (0.070) | 5/332 | NT | 7.3% | coding (2058/2112 nt) | fusB | Elongation factor G 2 |
? | AE015451 | = 4647758 | 54 (0.800) | coding (1381/1461 nt) | PP_4112 | Sulphate transporter |
AGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4647259‑4647493 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctatgccAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTC < AE015451/4647758‑4647652 AGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGC > 2:687159/1‑234 GTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGTGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCC > 1:703436/1‑193 TCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCG < 2:668247/209‑1 ATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTT > 2:1199719/1‑233 ATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTC < 1:1199724/235‑1 TGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTA > 2:732788/1‑123 GGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCA > 1:1231016/1‑160 GGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCA < 2:1231011/160‑1 TGCCAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCG < 1:1042594/40‑1 AGTGTTGCTGGAGCCGGTGATGAAGGTAGAGGTGGTGACGCCGGAGGAATATCAGGGCGACATCCTCGGCGACTTGAGCCGACGTCGCGGCATGATCCAGGACGGTGATGAAACACCGGCTGGCAAGGTGATACGTGCCGAAGTGCCGTTGGGTGAAATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4647259‑4647493 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctatgccAAGGCGGGCAAGCATTTGCGCGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTC < AE015451/4647758‑4647652 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |