New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 491104269 (0.970)3 (0.040) 3/332 NT 4.3% coding (670/1197 nt) cycH cytochrome c‑type biogenesis protein
?AE015451 = 4911129 67 (0.990)coding (583/1197 nt) cycH cytochrome c‑type biogenesis protein
Rejected: Frequency below/above cutoff threshold.

CTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4910806‑4911042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcccagTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGC  <  AE015451/4911129‑4910899
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
CTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCC                                                                                                                                                                                                                                           <  1:501427/235‑1
                                                                                                                                          TGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTG                                                                                                                                               <  2:971344/189‑1
                                                                                                                                                               CGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCTGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGAC                                                                                                                                                      >  2:479919/1‑161
                                                                                                                                                                                               CCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTT                                                                                                                        >  2:480866/1‑159
                                                                                                                                                                                                                                     AGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAG     <  1:429261/236‑1
                                                                                                                                                                                                                                         CCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGC  >  1:38360/1‑235
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
CTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4910806‑4911042
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcccagTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGC  <  AE015451/4911129‑4910899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.