New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5334991 =	61 (0.850)	7 (0.100)	7/332	NT	11.2%	coding (1421/2976 nt)	PP_4695	Sensory box histidine kinase
	?	AE015451	5335018 =	53 (0.780)					coding (1448/2976 nt)	PP_4695	Sensory box histidine kinase

GTAGAGGTCGCGCAGTGCTTGCTCGACTTCCTTTTGCGCGGCCTTGGCGCCCAGCGGCTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5335229‑5334991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggccaACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAACGCCGCCC  >  AE015451/5335018‑5335252                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTAGAGGTCGCGCAGTGCTTGCTCGACTTCCTTTTGCGCGGCCTTGGCGCCCAGCGGCTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCG                                                                                                                                                                                                                                                 <  1:131885/235‑1            GCAGTGCTTGCTCGACTTCCTTTTGCGCGGCCTTGGCGCCCAGCGGCTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGC                                                                                                                                                                                                                                                  <  1:865640/223‑1                         tACTTCCTTTGGCGCGGCCTTGGCGCCCAGCGGGTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCA                                                                                                                                                                                                                                             <  1:90588/214‑1                                        GGCCTTGGCGCCCAGCGGCTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCGAACGAGGCGATGGCGGCCA                                                                                                                                                                                                                                             >  1:17091/1‑200                                                                           CGAATTCCTGCGGCGAGGCGGCGTGCCGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCCCAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCA                                                                                                                                                                                                   <  1:279998/207‑1                                                                                TCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCGCGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCA                                                                                                                                                                                                                              <  1:1160607/175‑1                                                                                                                     GGCGGCGCACGTTATCCGCGGCACAGGCTTCGGCCGCACTGACCTCTGCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCA                                                                                                                                                                                    <  2:360785/180‑1                                                                                                                     GGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTC                                                                                                                                                                                                             <  2:793514/155‑1                                                                                                                                                                     CGGTGCGGGCGGTGGTGAACAGGGAGATCAGGGGGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGT                                                                                                                                                                                      <  2:1145706/130‑1                                                                                                                                                                               GTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGGGGCGATGCCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAA                                                                                                                                                        <  1:132297/150‑1                                                                                                                                                                                                                     TGGCCGCCAACGAGGCGATGGCGGCCAACGTGCTGCTGTTCACCCTGGTCTCACTGTTCACCAACGCCAGCACAGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCA                                        >  2:796594/1‑224                                                                                                                                                                                                                                       TGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAA          <  1:1057795/236‑1                                                                                                                                                                                                                                          CGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAA          <  2:824097/233‑1                                                                                                                                                                                                                                             CCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAACG        <  1:937265/232‑1                                                                                                                                                                                                                                               AACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAACGCCGCCC  >  1:1170039/1‑236                                                                                                                                                                                                                                               AACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAACGCCG     >  2:1102319/1‑233                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTAGAGGTCGCGCAGTGCTTGCTCGACTTCCTTTTGCGCGGCCTTGGCGCCCAGCGGCTTGGCCAGCTGGGTGGCGAATTCCTGCGGCGAGGCGGCGTGCAGCTCGCGGCGCTGTGGGCGGCGCACGTTATCCACGGCACAGGCTTCGGCCGCACTGACCTCTTCGGTGCTGGCGTTGGTGAACAGTGAGATCAGGGTGAACAGCAGCACGTTGGCCGCCAACGAGGCGATGGCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5335229‑5334991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggccaACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCTCTACCTGCCGTTCGACGAACGCCGCCC  >  AE015451/5335018‑5335252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.