New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5334991 =	61 (0.850)	7 (0.100)	7/332	NT	11.2%	coding (1421/2976 nt)	PP_4695	Sensory box histidine kinase
	?	AE015451	5335018 =	53 (0.780)					coding (1448/2976 nt)	PP_4695	Sensory box histidine kinase

CAGAGCCTGGCCAACCTGGGCATCGTCGCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCT  >  AE015451/5334756‑5335225                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           gggcggcgttcgtcgaacggcaggtagaggtcgcgcagtgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtt                                                                                                                                                                                                                                            >  1:1170039‑M1/236‑236 (MQ=255)    cggcgttcgtcgaacggcaggtagaggtcgcgcagtgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtt                                                                                                                                                                                                                                            >  2:1102319‑M1/233‑233 (MQ=255)       cgttcgtcgaacggcaggtagaggtcgcgcagtgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTgg                                                                                                                                                                                                                                          <  1:937265‑M1/3‑1 (MQ=255)         ttcgtcgaacggcaggtagaggtcgcgcagtgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGgccg                                                                                                                                                                                                                                       <  2:824097‑M1/6‑1 (MQ=255)         ttcgtcgaacggcaggtagaggtcgcgcagtgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGGCCGCCa                                                                                                                                                                                                                                    <  1:1057795‑M1/9‑1 (MQ=255)                   ggCATCGTCGCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGtt                                                                                                                                                                                                                          <  1:737219/236‑1 (MQ=255)                     cATCGTCGCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGt                                                                                                                                                                                                                           <  2:605374/233‑1 (MQ=255)                        cgtcgCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTggcg                                                                                                                                                                                                                      <  1:625375/235‑1 (MQ=255)                         gtcgCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAGCCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTggcgg                                                                                                                                                                                                                     <  1:718144/235‑1 (MQ=255)                                     gCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGtgctgc                                                                                                                                                                                                         <  1:633696/235‑1 (MQ=255)                                       tgcttgctcgacttccttttgcgcggccttggcgcccagcggcttggccagctgggtggcgaattcctgcggcgaggcggcgtgcagctcgcggcgctgtgggcggcgcacgttatccacggcacaggcttcggccgcactgacctcttctgtgctggcgttggtgaacagtgagaccagggtgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCa                                                                                                                                                                                                                  >  2:796594‑M1/198‑224 (MQ=255)                                                   ccTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGAtc                                                                                                                                                                                           <  1:490138/235‑1 (MQ=255)                                                              tGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTggcg                                                                                                                                                                                                                      >  2:1252354/1‑197 (MQ=255)                                                                         ctctACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCAc                                                                                                                                                                    >  1:1175376/1‑236 (MQ=255)                                                                               tGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAag                                                                                                                                                               >  1:572509/1‑235 (MQ=255)                                                                                    aaccgccaaccgccGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCCGCACCGAAGAGGTCa                                                                                                                                                         >  1:571743/1‑236 (MQ=255)                                                                                    aaccgccaaccgccGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCg                                                                                                                                                                  >  1:192277/1‑227 (MQ=255)                                                                                    aaccaccaaccgccGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCa                                                                                                                                                         >  1:1264488/1‑236 (MQ=255)                                                                                         ccaaccgccGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACg                                                                                                                                                                                                               >  2:265473/1‑177 (MQ=255)                                                                                              cgccgcGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGtgctgc                                                                                                                                                                                                         >  1:608955/1‑178 (MQ=255)                                                                                              cgccgcGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGa                                                                                                                                                                                             <  2:417837/190‑1 (MQ=255)                                                                                               gccgcGGTGTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCaa                                                                                                                                                                             <  1:315352/205‑1 (MQ=255)                                                                                                ccgcGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTTACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGt                                                                                                                                                                                                              <  2:847507/171‑1 (MQ=255)                                                                                                     gTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCtg                                                                                                                                         <  1:516178/235‑1 (MQ=255)                                                                                                           tCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTg                                                                                                                                                                                              >  2:659789/1‑176 (MQ=255)                                                                                                             gCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTg                                                                                                                                                                                     <  1:610998/183‑1 (MQ=255)                                                                                                                gggCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGAtc                                                                                                                                                                                           <  2:263004/174‑1 (MQ=255)                                                                                                                         gCCGGCACCTTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCa                                                                                                                                                         <  2:603512/199‑1 (MQ=255)                                                                                                                         gCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCa                                                                                                                                                                        <  2:1174949/184‑1 (MQ=255)                                                                                                                               aCCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTc                                                                                                                                                                                                    <  2:234791/150‑1 (MQ=255)                                                                                                                               aCCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGccc                                                                                                                 <  2:453205/233‑1 (MQ=255)                                                                                                                                     gtgtGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTgc                                                                                                                        <  1:534941/220‑1 (MQ=255)                                                                                                                                      tgtgGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAgcgc                                                                                                          >  2:813304/1‑233 (MQ=255)                                                                                                                                             ggTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTg                                                                                                 >  1:824102/1‑235 (MQ=255)                                                                                                                                                  ccATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAg                                                                                                    >  1:540982/1‑227 (MQ=255)                                                                                                                                                   cATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCAcgccg                                                                                          <  1:1034420/236‑1 (MQ=255)                                                                                                                                                   cATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTGTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGCGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCAcgc                                                                                            <  2:721208/234‑1 (MQ=255)                                                                                                                                                       ttatccacggcacaggcttcggccgcactgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGGCCGGCATCGCCCCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAAc                                                                                                                                                                            <  1:132297‑M1/65‑1 (MQ=255)                                                                                                                                                                cTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAaga                                                                                                                                                              >  2:441854/1‑155 (MQ=255)                                                                                                                                                                cTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAgcg                                                                                                           >  2:1261332/1‑206 (MQ=255)                                                                                                                                                                                   tgacctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGCAGAGGTCAGTGCGGCCGAAGCCTGTGCCGCGGATAACGTGCgccgcc                                                                                                                  <  2:360785‑M1/123‑1 (MQ=255)                                                                                                                                                                                     ttCTACATCCCGCGGCTGGACATGATCTACGTGCTGGACGACACCAGCTGGCACATGGCCGCCACCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAg                                                                                                                                             <  2:891110/151‑1 (MQ=255)                                                                                                                                                                                     acctcttcggtgctggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCCCCCTGATCTCCCTGTTCACCACCGCCCGCACCg                                                                                                                                                                  <  2:1145706‑M1/75‑1 (MQ=255)                                                                                                                                                                                         aCATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCg                                                    >  1:1268334/1‑236 (MQ=255)                                                                                                                                                                                         aCAGCCCGCTGCTGGACATGACCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCAcgccg                                                                                          <  2:859995/198‑1 (MQ=255)                                                                                                                                                                                           aTCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCt                                                  <  1:813309/236‑1 (MQ=255)                                                                                                                                                                                              ccGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGcgcc                                                                                                                     <  2:986135/166‑1 (MQ=255)                                                                                                                                                                                               cGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGccc                                                                                                                 >  2:741288/1‑169 (MQ=255)                                                                                                                                                                                               cGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTggg                                               >  1:64533/1‑235 (MQ=255)                                                                                                                                                                                                 ctgctgGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAAc                                                                                                                                                                                                                >  2:517151/1‑72 (MQ=255)                                                                                                                                                                                                 ctgctgGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAAc                                                                                                                                                                                                                <  1:517156/72‑1 (MQ=255)                                                                                                                                                                                                  tggcgttggtgaacagtgagatcagggtgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGGGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCGGCACGCCGCCTCGCCGCAGGAATTCg                                                                        <  1:279998‑M1/165‑1 (MQ=255)                                                                                                                                                                                                  tgctgGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCCCCCAGCTGGCCAAGCCGCGGGGCGcc                                           >  1:194761/1‑236 (MQ=255)                                                                                                                                                                                                      ggACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCaa                                         <  1:631936/234‑1 (MQ=255)                                                                                                                                                                                                       ggcATGATCGATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTcgccg                                                                                  <  1:273490/190‑1 (MQ=255)                                                                                                                                                                                                          aTGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCcgc                                   <  1:955214/236‑1 (MQ=255)                                                                                                                                                                                                            gaacagtgagatcagggtgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCgccgcc                                                                                                                  <  2:793514‑M1/123‑1 (MQ=255)                                                                                                                                                                                                                gctgtgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCGACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAg                                                                                                                                             <  1:85261/122‑1 (MQ=255)                                                                                                                                                                                                                   gtgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          <  1:576194/236‑1 (MQ=255)                                                                                                                                                                                                                    tgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          <  1:1031394/235‑1 (MQ=255)                                                                                                                                                                                                                       tGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          <  2:1268329/232‑1 (MQ=255)                                                                                                                                                                                                                          acgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCAGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGc                                                      >  1:37381/1‑201 (MQ=255)                                                                                                                                                                                                                          acgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCAGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGc                                                      <  2:37380/201‑1 (MQ=255)                                                                                                                                                                                                                           cgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCACGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTc                      >  1:267240/1‑232 (MQ=255)                                                                                                                                                                                                                            gacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTggtgtc                                                        <  1:403055/197‑5 (MQ=255)                                                                                                                                                                                                                            gacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCaa                                         >  1:593388/1‑212 (MQ=255)                                                                                                                                                                                                                             tgaacagcagcacgtTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGCGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGa                                                                             <  1:1160607‑M1/160‑1 (MQ=255)                                                                                                                                                                                                                             acacCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          >  1:957602/1‑226 (MQ=255)                                                                                                                                                                                                                               acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCt                                                  >  1:845753/1‑200 (MQ=255)                                                                                                                                                                                                                                 cAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGagcaagca             >  1:1234236/1‑235 (MQ=255)                                                                                                                                                                                                                                     tGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACt           <  2:769595/233‑1 (MQ=255)                                                                                                                                                                                                                                      ggCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          <  1:1075594/217‑1 (MQ=255)                                                                                                                                                                                                                                      ggCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGa                          >  2:1075589/1‑217 (MQ=255)                                                                                                                                                                                                                                           aTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACct  >  1:917274/1‑236 (MQ=255)                                                                                                                                                                                                                                            TGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAACCCGCTGGGCGCCAAGGCCGCGCCAAAGGAAgta                      <  1:90588‑M1/215‑2 (MQ=255)                                                                                                                                                                                                                                            TGGCCGCCATCGCCTCGTTCGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGcc                                     >  1:17091‑M1/1‑200 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           CAGAGCCTGGCCAACCTGGGCATCGTCGCCTTCGTCGCCACCTTGCAGTTCCTGCCCGGAGTGCTGTCGGTACTCTACTGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGCCGCTGGGCGCCAAGGCCGCGCAAAAGGAAGTCGAGCAAGCACTGCGCGACCT  >  AE015451/5334756‑5335225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.