New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5384862	81 (1.130)	6 (0.090)	6/326	NT	7.5%	coding (1326/1671 nt)	lldP	L‑lactate permease
	?	AE015451	= 5384850	73 (1.100)					coding (1314/1671 nt)	lldP	L‑lactate permease

ACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5384617‑5384862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtaccggcCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGC  <  AE015451/5384850‑5384683                                                                                                                                                                                                                                                                                                                                                                                                                                accgccggcatGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGTGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGG                                                                                                                                                                                     >  1:799863/12‑235                                                                                      TGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTTGCCG                                                                                                                                                                                  >  2:938676/1‑153                                                                                            AGATCAACTTCAAAACTGGTCTTCCCACTTTCAAAGAAGCCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCC                                                                                                                                           <  1:401820/186‑1                                                                                                                                                  GCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATATCCTCGACCATGGCCCTGGTGCTGGC                                                                                                                                                                                    >  2:693624/1‑91                                                                                                                                                               tTCGATCGGCATGCTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCCACCATGGCCCTGGTGCTGGCCGG                                                                                                                                                                                 <  2:675536/80‑1                                                                                                                                                                                     TTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGG                                                                                                                                                   >  1:310401/1‑89                                                                                                                                                                                     TTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGG                                                                                                                                                   <  2:310397/89‑1                                                                                                                                                                                          CTTCGTCACCAACTACTCGGGCATGTCCTCGACAATGGCCCTGGTGCTGGCCGGT                                                                                                                                                                                >  2:93848/1‑55                                                                                                                                                                                                             GGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATC             >  2:811847/1‑199                                                                                                                                                                                                                        GACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGG                                                                                                                                                               <  2:685468/42‑1                                                                                                                                                                                                                                CCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGC  >  2:914761/1‑191                                                                                                                                                                                                                                                                                                                                                                                                                                ACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5384617‑5384862 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtaccggcCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGC  <  AE015451/5384850‑5384683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.