New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5965018 =	92 (1.290)	3 (0.040)	3/330	NT	3.3%	coding (212/696 nt)	had	putative (S)‑2‑haloacid dehalogenase
	?	AE015451	5965067 =	87 (1.290)					coding (261/696 nt)	had	putative (S)‑2‑haloacid dehalogenase
Rejected: Frequency below/above cutoff threshold.

CAGGTCCTCGGCGCACAGGGCAAAGCGGAAGTAATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5965262‑5965018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcacgcACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCGTTCCTCGAAG  >  AE015451/5965067‑5965299                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGGTCCTCGGCGCACAGGGCAAAGCGGAAGTAATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAA                                                                                                                                                                                                                                                    >  1:201683/1‑236            CGCACAGGGCAAAGCGGAAGTAATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGC                                                                                                                                                                                                                                           >  2:817750/1‑234                CAGGGCAAAGCGGAAGTAATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACG                                                                                                                                                                                                                                            <  2:1027200/229‑1                                 AATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACA                                                                                                                                                                                                                                                 <  2:1203891/207‑1                                          ACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACA                                                                                                                                                                                                                                                 <  1:740646/198‑1                                                   GGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACA                                                                                                                                                                                                                                                 >  2:745343/1‑189                                                   GGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACA                                                                                                                                                                                                                                                 <  1:745348/189‑1                                                                                                    GCGCAAGATTGCAAGCCCCGGCTGCACCGCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTGGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAACCAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCC                                                                                                                                                                                            <  1:481068/193‑1                                                                                                                                     GAAGATCTCCACCTGGTGGCTGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCGCTTCCAGGGCATGAAACACCACG                                                                                                                                                                                                                                            >  2:522850/1‑112                                                                                                                                                ccgGGTGGCGGGCATGCAGGAACACTTCGAGGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAG                                                                                                                                                                                                              <  2:953557/128‑1                                                                                                                                                                         TTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAACCAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCT                                                                                                                                                                             <  2:710661/139‑1                                                                                                                                                                                                                                            agCAGCACGCACAGGCGATGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAG                                             <  1:229682/198‑1                                                                                                                                                                                                                                             ACAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCGTTCC        <  1:1100973/236‑1                                                                                                                                                                                                                                             ACAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCG                                                  >  1:873074/1‑194                                                                                                                                                                                                                                             ACAGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCG                                                  <  2:873069/194‑1                                                                                                                                                                                                                                               AGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCGTTCC        <  2:817473/234‑1                                                                                                                                                                                                                                               AGCACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGACATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCG            >  1:301844/1‑230                                                                                                                                                                                                                                                 CACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGC                                                                                                                                                                                             <  2:1144572/51‑1                                                                                                                                                                                                                                                 CACGCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGC                                                                                                                                                                                             >  1:1144577/1‑51                                                                                                                                                                                                                                                  cCGCACAGGCGCTGGCCACCGACGGCTTCGAAGTGTCCCCGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGG                                                                                   <  2:266849/155‑1                                                                                                                                                                                                                                                    GCACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCGTTCCTCGAAG  >  1:206967/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGGTCCTCGGCGCACAGGGCAAAGCGGAAGTAATCGGCCAACCCCAGCCGGCTGACGTCGGCATTGCCGTTGGTGACCACCCCCAGGATGTATTGATGGCGCAAGATTTCAAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5965262‑5965018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagcacgcACAGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGGCCGATTACTTCCGCTTTGCCCTGTGCGCCGAGGACCTGGGCATTGGCAAGCCAGACCCGGCGCCGTTCCTCGAAG  >  AE015451/5965067‑5965299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.