Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3579904	3580166	263	26 [23]	[23] 24	benR	BenABC operon transcriptional activator

GCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATCGGTCTGTCCCGCACC  >  AE015451/3579677‑3579982                                                                                                                                                                                                                                   |                                                                                gtccAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTcaccac                                                                          <  1:1171638/232‑1 (MQ=255) gCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTcaccac                                                                          <  2:573405/234‑1 (MQ=255) gCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGc                                                                        <  1:545342/236‑1 (MQ=255)            cccATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTAc                                                              <  1:1237080/235‑1 (MQ=255)               ttCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCt                                                           <  2:1079266/234‑1 (MQ=255)                  gTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGtt                                                                                 <  1:223231/210‑1 (MQ=255)                            ccAACCCCCGCCTTTTCGCTGTAGTGTCACCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTcaccac                                                                          <  1:296917/207‑1 (MQ=255)                                  cccGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCa                                       <  1:877877/236‑1 (MQ=255)                                           ttGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCt                                                           <  1:80022/207‑1 (MQ=255)                                               tGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCa                           <  1:1020611/235‑1 (MQ=255)                                                    tgtCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCAtt                      <  1:676036/235‑1 (MQ=255)                                                       ccccTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTa                                <  1:57940/222‑1 (MQ=255)                                                        cccTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTAtgtg                                            <  2:743848/209‑1 (MQ=255)                                                        cccTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATc                 <  1:1135799/236‑1 (MQ=255)                                                                        tCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATCGGTCTGTCCCGcacc  <  1:20196/235‑1 (MQ=255)                                                                                       aCGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGc                             <  2:618715/193‑1 (MQ=255)                                                                                                    ccGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATCGGTCTGTCCCGcacc  <  2:1226982/207‑1 (MQ=255)                                                                                                                           gCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATc                 <  1:49397/169‑1 (MQ=255)                                                                                                                                              cGGGAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATCGGTCTGTCCCGcacc  <  2:376132/165‑1 (MQ=255)                                                                                                                                                gTAGGGCGCGGCGACCAGAACAATAACGCTACCGAGTGCCTTGCCGATGGAAATCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTAt                                               <  2:275417/118‑1 (MQ=255)                                                                                                                                                                     aaTAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCAt                  <  1:1238209/126‑1 (MQ=255)                                                                                                                                                                     aaTAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCAt                  >  2:1238204/1‑126 (MQ=255)                                                                                                                                                                          cGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGtt                                                                                 >  2:770173/1‑58 (MQ=255)                                                                                                                                                                          cGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGtt                                                                                 <  1:770178/58‑1 (MQ=255)                                                                                                                                                                               ccGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCtt                                                                <  2:262072/70‑1 (MQ=255)                                                                                                                                                                               ccGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCtt                                                                >  1:262076/1‑70 (MQ=255)                                                                                                                                                                                                                                   |                                                                                GCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGACCGTGATGACCGCAACCACAGCCCACAAGGCGGTAGGGCGCGGCGACCAGAACAATAACGATACCGAGTGCCTTGCCTATGGAAAGCCGCCTGCTGAGCGAGCGCAGTAGCGTGTTTCACCACGCCGACCCTTACGCTGTGTCCGATTATGTGAACCAGCATGTAGGCCAGCATTGCATCGGTCTGTCCCGCACC  >  AE015451/3579677‑3579982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑