Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3579904	3580166	263	26 [23]	[23] 24	benR	BenABC operon transcriptional activator

CAGCCTCAGCCATCGCAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCATGGTTTGTCATGAGGCGGAAGTGAGCGATTC  >  AE015451/3579997‑3580398                                                                                                                                                                           |                                                                                                                                                                                                                                        cAGCCTCAGCCATCGCAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAAcc                                                                                                                                                                                                                        >  2:107786/1‑188 (MQ=255) cAGCCTCAGCCATCGCAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTc                                                                                                                                                                         >  1:650321/1‑235 (MQ=255)           cATCGCAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGt                                                                                                                                                              >  1:1263666/1‑236 (MQ=255)                cAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAAACATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGa                                                                                                                                                         >  1:686840/1‑236 (MQ=255)                                   cTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGa                                                                                                                                       >  1:655734/1‑235 (MQ=255)                                          gTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGGTGACCTGACTTACTCGGAAGACTGCGAGACGTTCATCCTCCAGGCGCCGACCCGGatgctg                                                                                                                                              >  1:361149/1‑221 (MQ=255)                                                   aTGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGgct                                                                                                                                                  >  2:899058/1‑208 (MQ=255)                                                   aTGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAgcg                                                                                                                       >  1:85808/1‑235 (MQ=255)                                                                    gTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCg                                                                                                              >  1:890843/1‑227 (MQ=255)                                                                                     ggAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTgc                                                                                    >  1:708809/1‑236 (MQ=255)                                                                                                 ccaccTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTgcgcc                                                                                 >  2:935224/1‑226 (MQ=255)                                                                                                   accTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGa                                                                                                                                >  2:536696/1‑178 (MQ=255)                                                                                                       gCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTg                                                                   >  2:403628/1‑235 (MQ=255)                                                                                                        cAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGATTTGCTGCTGATCAAccc                                                                                                                                                                                                                       >  2:533624/1‑86 (MQ=255)                                                                                                                         cAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACt                                                                                                                                          >  2:614186/1‑146 (MQ=255)                                                                                                                              gCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGaa                                            >  1:1190160/1‑235 (MQ=255)                                                                                                                                    ggCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACCACCCGGTTGACCTGACTTGCTCGGAAGACTGCGAGAAGTTCATCCTCa                                                                                                                                                                  >  2:488013/1‑111 (MQ=255)                                                                                                                                           aCATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCAt                                <  2:686835/234‑1 (MQ=255)                                                                                                                                                       gcagcaCCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACctgctg                                     >  2:639424/1‑217 (MQ=255)                                                                                                                                                                    ccaggCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCATGGTTTGTCATGAGGCGGAAGTGAGCGa     >  1:75255/4‑236 (MQ=255)                                                                                                                                                                       ggCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCATGGTTTGTCATGAGGCGGAAGTGAGCGAtt   >  1:655284/1‑235 (MQ=255)                                                                                                                                                                       ggCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCATGGTTTGTCATGAGGCGGAAGTGAGCGATTc  <  2:75254/236‑1 (MQ=255)                                                                                                                                                                          gAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCCTGGTTTGTCCTGAGGCGGAAGTgc         >  2:249098/1‑225 (MQ=255)                                                                                                                                                                           aaTTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGt                                               >  2:793236/1‑187 (MQ=255)                                                                                                                                                                           |                                                                                                                                                                                                                                        CAGCCTCAGCCATCGCAAGTTCGCCGAGCTCGACCTGTGCCGTATCAGCTATGGCGGCAGTGTTCGCGTGACGTCGCCCGCGCTGGAAACCATCTACCACCTGCAAGTCTTGCTCAATGGCAACTGCCTGTGGCGCGGACATAAGCGCGAGCAGCACCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGACCCGGTTGACCTGACTTACTCGGAAGACTGCGAGAAGTTCATCCTCAAGGTGCCGACCCGGCTGCTGGACTCGATCTGCGATGAACAGCGCTGGCAGCGGCCTGATGGGGGCGTGCGGTTCTTGCGCAATCATTACCGGCTGGATGAGCTGGATGGCTTCGTGAACCTGCTGGCCATGGTTTGTCATGAGGCGGAAGTGAGCGATTC  >  AE015451/3579997‑3580398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑