Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2038136	2038427	292	24 [22]	[23] 27	[rffE]	[rffE]

CGCGGGTGAACCCGCACCTACATTGAGCGGTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCA  >  AE015451/2038320‑2038656                                                                                                             |                                                                                                                                                                                                                                     cgcgGGTGAACCCGCACCTACATTGAGCGGTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTc                                                                                                          >  1:754811/1‑233 (MQ=255)    gggTGAACCCGCACCTACATTGAGCGGTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGGACTCAACGCCCg                                                                                                                                                                                     >  1:179252/1‑155 (MQ=255)     ggTGAACCCGCACCTACATTGAGCGGTGGGGGGGGGG‑CAGGTGGGCAGGGGCTTGCGGTTGCCCGGGCAGGCCTTGCCATCGCCCAAGGGGGTTTGGGGGAAACTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTa                                                                                                                                                                                                >  2:786139/1‑142 (MQ=255)                        tGAGCGGT‑GGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGAt                                                                                                                                                                           >  2:359144/1‑144 (MQ=255)                           gCGGT‑GGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTgccg                                                                                                                                      <  1:359149/178‑1 (MQ=255)                             ggTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGc                                                                            >  1:1106897/1‑235 (MQ=255)                             ggTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGc                                                                            >  1:866880/1‑235 (MQ=255)                              ggtgggggggggCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCg                                                                          >  1:171719/4‑236 (MQ=255)                               tGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCg                                                                          >  1:1203455/1‑235 (MQ=255)                                            aGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTg                                                             >  1:410480/1‑235 (MQ=255)                                                       gCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCgg                                                 >  1:622667/1‑235 (MQ=255)                                                                   cgcgcgcAGGCTTTGCCATCGCCATAGGGGGTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGATCGGTAGTGTCGCGCATCACCAGCGCCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGaa                                      >  1:720872/1‑235 (MQ=255)                                                                        gcAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACAt                                >  1:639719/1‑236 (MQ=255)                                                                          aGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTCGTGTCGCGCATCACCAGCACCggc                                                                                       >  2:238330/1‑178 (MQ=255)                                                                            gCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGgc                                                                        <  2:866875/192‑1 (MQ=255)                                                                                         cATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCtt                                                                    >  2:656630/1‑183 (MQ=255)                                                                                              gggTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTc                                              <  1:1011778/200‑1 (MQ=255)                                                                                                   aTGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCt                                                                                                                    >  2:643396/1‑125 (MQ=255)                                                                                                     gggCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACgg    >  1:533691/1‑235 (MQ=255)                                                                                                      ggCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCggg                       >  1:370578/1‑215 (MQ=255)                                                                                                      ggCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAaacgaacg     >  2:669797/1‑233 (MQ=255)                                                                                                      ggCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCa  >  1:1199596/1‑236 (MQ=255)                                                                                                           aGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGa                                                 >  2:1011773/1‑184 (MQ=255)                                                                                                             cTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTg                                                                                                                                                               >  1:188573/1‑72 (MQ=255)                                                                                                             cTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTg                                                                                                                                                               <  2:188570/72‑1 (MQ=255)                                                                                                             cTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCggg                       >  1:1280912/1‑208 (MQ=255)                                                                                                             cTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAaacg         >  2:570408/1‑222 (MQ=255)                                                                                                             |                                                                                                                                                                                                                                     CGCGGGTGAACCCGCACCTACATTGAGCGGTGGGGGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTCGGTGCCCACCAGCTTGACCGTACCTGCCGCCACGGCTTCTGGGCGCTCGGTAGTGTCGCGCATCACCAGCACCGGTTTGCCCAGGGCCGGCGCTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCA  >  AE015451/2038320‑2038656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑