New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 605066	28 (0.690)	3 (0.080)	3/322	NT	9.5%	coding (379/969 nt)	thiL	thiamin monophosphate kinase
	?	AE015451	= 605092	30 (0.770)					coding (405/969 nt)	thiL	thiamin monophosphate kinase

GGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCTGACTGGCTGGCGGCCTATGCCGACGGCCTTGGTCGCATGGCCCACCGTTGCCGCATGAGCCTGATCGGTGGTGACACCACGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/604843‑605066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggccGAACACGGTCACGGTGATGCTCAACGGGCCGCGCGTGGTGTCACCACCGATCAGGCTCATGCGGCAACGGTGGGCCATGCGACCAAGGCCGTCGGCATAGGCCGCCAGCCAGTCAGGGCCAACGTCAGGCAGGGTCAGTGCGAGGGTGAAGCCGATTGCAGTCGCGCCCATGGCTGCCAGGTCACTGGCCGCCACAGCCAACGAACGCTGGCCAAGCAGCAACGGATC  <  AE015451/605092‑604865                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCTGACTGGCTGGCGGCCTATGCCGACGGCCTTGGTCGCATGGCCCACCGTTGCCGCATGAGCCTGATCGGTGGTGACACCACGCGCGGCCGAACACGGTCAC                                                                                                                                                                                                                          <  1:536616/236‑1                                                                                                                                                 GGCGGCCTATGCCGACGGCCTTGGTCGCATGGCCCACCGTTGCCGCATGAGCCTGATCGGTGGTGACACCACGCGCGGCCGAACACGGTCACGGTGATGCTCAACGGGCCGC                                                                                                                                                                                                      <  2:67426/112‑1                                                                                                                                                 GGCGGCCTATGCCGACGGCCTTGGTCGCATGGCCCACCGTTGCCGCATGAGCCTGATCGGTGGGGACACCACGCGCGGCCGAACACGGTCACGGTGATGCTCAACGGGCCGC                                                                                                                                                                                                      >  1:67426/1‑112                                                                                                                                                                                                                          CGCGGCCGAACACGGTCACGGTGATGCTCAACGGGCCGCGCGTGGTGTCACCACCGATCAGGCTCATGCGGCAACGGTGGGCCATGCGACCAAGGCCGTCGGCATAGGCCGCCAGCCAGTCAGGGCCAACGTCAGGCAGGGTCAGTGCGAGGGTGAAGCCGATTGCAGTCGCGCCCATGGCTGCCAGGTCACTGGCCGCCACAGCCAACGAACGCTGGCCAAGCAGCAACGGATC  <  1:655111/235‑1                                                                                                                                                                                                                                CGAACACGGTCACGGTGATGCTCAACGGACCGCGCGTGGGGTCACCACCGATCAGGCTCATGCGGCAACGGTGGGCCATGCGACCAAGGCCGTCGGg                                                                                                                                      >  2:596134/1‑96                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCTGACTGGCTGGCGGCCTATGCCGACGGCCTTGGTCGCATGGCCCACCGTTGCCGCATGAGCCTGATCGGTGGTGACACCACGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/604843‑605066 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggccGAACACGGTCACGGTGATGCTCAACGGGCCGCGCGTGGTGTCACCACCGATCAGGCTCATGCGGCAACGGTGGGCCATGCGACCAAGGCCGTCGGCATAGGCCGCCAGCCAGTCAGGGCCAACGTCAGGCAGGGTCAGTGCGAGGGTGAAGCCGATTGCAGTCGCGCCCATGGCTGCCAGGTCACTGGCCGCCACAGCCAACGAACGCTGGCCAAGCAGCAACGGATC  <  AE015451/605092‑604865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.