New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 941997 = | 40 (0.980) | 3 (0.080) | 3/316 | NT | 8.3% | coding (3625/18933 nt) | PP_0806 | putative Surface adhesion protein |
? | AE015451 | 942200 = | 29 (0.750) | coding (3422/18933 nt) | PP_0806 | putative Surface adhesion protein |
GCCGACTTGCTGCCGCCTGCACAACCGACTGACCTGGCCTTGGCCGATGGCGTCACTTTCACCGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/942066‑941997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggtcgcgAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACC > AE015451/942200‑942346 GCCGACTTGCTGCCGCCTGCACAACCGACTGACCTGGCCTTGGCCGATGGCGTCACTTTCACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAG < 1:706518/107‑1 CGATGGCGTCACTTTCACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCAC > 1:174476/1‑52 CGATGGCGTCACTTTCACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCAC < 2:174475/52‑1 GGTCGCGGGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACC < 2:151875/154‑1 GCCGACTTGCTGCCGCCTGCACAACCGACTGACCTGGCCTTGGCCGATGGCGTCACTTTCACCGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/942066‑941997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggtcgcgAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACC > AE015451/942200‑942346 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |