New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	941997 =	40 (0.980)	3 (0.080)	3/316	NT	8.3%	coding (3625/18933 nt)	PP_0806	putative Surface adhesion protein
	?	AE015451	942200 =	29 (0.750)					coding (3422/18933 nt)	PP_0806	putative Surface adhesion protein

GCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGCCAGCGGCATCGGTCGCGGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCG  >  AE015451/941970‑942419                                                                                                                                                                                                                                       |                                                                                                                                                                                                                            gcACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATg                                                                                                                                                                                                                        >  1:443033/1‑236 (MQ=255)             tAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCcgcg                                                                                                                                                                                                            <  1:335110/236‑1 (MQ=255)             tAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCcgcg                                                                                                                                                                                                            >  1:273360/1‑236 (MQ=255)                          gccgcGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCa                                                                                                                                                                                               >  1:311955/1‑236 (MQ=255)                                               gCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTc                                                                                                                                                                               <  2:575171/231‑1 (MQ=255)                                                ccATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCGGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACg                                                                                                                                                                                                       <  2:443672/206‑1 (MQ=255)                                                 cATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGa                                                                                                                                                                        >  1:728615/1‑236 (MQ=255)                                                                     gTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCGGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCt                                                                                                                                                                                                  <  2:644725/190‑1 (MQ=255)                                                                      tCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGGGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACg                                                                                                                                                                                                       <  1:499001/184‑1 (MQ=255)                                                                        ggTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCa                                                                                                                                                                                                         <  2:650882/180‑1 (MQ=255)                                                                                       agcaAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCcgcg                                                                                                                                                                                                            >  1:208926/1‑162 (MQ=255)                                                                                       agcaAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCcgcg                                                                                                                                                                                                            <  2:208925/162‑1 (MQ=255)                                                                                         caAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATGCGTTGCCGGCGGCAGCGGTGAGGGTGACTGGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCa                                                                                                                                                                                                         <  2:84440/163‑1 (MQ=255)                                                                                            gTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAgg                                                                                                                                                <  2:735426/217‑1 (MQ=255)                                                                                                        gACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAg                                                                                                                    <  2:273359/233‑1 (MQ=255)                                                                                                                  ggTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGGGGTa                                                                                                         >  1:183907/1‑234 (MQ=255)                                                                                                                                                           gaaGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGt                                                                                                                           <  2:154050/174‑1 (MQ=255)                                                                                                                                                                 gccgacttgctgccgcctgcacaaccgactgacctggccttggccgatggcgtcactttcaccggtcgcgAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAg                                                                                                                                                                                         <  1:706518‑M2/37‑1 (MQ=255)                                                                                                                                                                     ccGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGcgcg                                                                                 >  1:160651/1‑207 (MQ=255)                                                                                                                                                                     ccGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGc                                                     >  1:491298/1‑235 (MQ=255)                                                                                                                                                                        tcgtTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCa                                                                                                >  2:416306/1‑189 (MQ=255)                                                                                                                                                                              aCGGCAGGATTCAGGGTGACGGTGAAGGTGCCAGCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCgg                                                                                                                <  2:276029/167‑1 (MQ=255)                                                                                                                                                                               cGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGGACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCCCCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGt                                                                               <  1:28598/199‑1 (MQ=255)                                                                                                                                                                                   aGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCGCGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGggtggt                                                                                                          >  1:174423/1‑168 (MQ=255)                                                                                                                                                                                            ggTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCgg                                                                                <  2:443032/185‑1 (MQ=255)                                                                                                                                                                                               gACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTAGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGCCAGCGGCATCGGTCGCGGTGGCTTgca                          >  1:413782/1‑236 (MQ=255)                                                                                                                                                                                                   gTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGGGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAgtg                                                         >  1:154144/1‑201 (MQ=255)                                                                                                                                                                                                    tGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGCCAGCgg                                               >  1:631428/1‑210 (MQ=255)                                                                                                                                                                                                             cgatggcgtcactttcaccggtcgcgAGGATGTTGCCGGCCGCGTCACGCAc                                                                                                                                                                                                    <  2:174475‑M2/26‑1 (MQ=255)                                                                                                                                                                                                             cgatggcgtcactttcaccggtcgcgAGGATGTTGCCGGCCGCGTCACGCAc                                                                                                                                                                                                    >  1:174476‑M2/27‑52 (MQ=255)                                                                                                                                                                                                                 cgcgGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGGTTGGTCGGTGCTTCAgg                                                                                                                   <  1:576796/129‑1 (MQ=255)                                                                                                                                                                                                                       gACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGCCAGCGGCATCGGTCGCGGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCg  >  1:694357/1‑236 (MQ=255)                                                                                                                                                                                                                                ggtcgcgGGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGAcc                                                                           <  2:151875‑M2/147‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                            GCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGATTCAGGGTGACGGTGAAGGTGCCATCCGCGGCGACGGTACCGGTCGCGAGGATGTTGCCGGCCGCGTCACGCACCTGCACGGTAGTGCCGGCTTCGCCTCGACCACTGAGCTGGCTGCCGGCAAGGCCGATCACCAGATTGGTCGGTGCTTCAGGCGGGGTGGTATCGCCGCCATCGATATCCGGCGCGGTGACCGAGCTGGTAACGGAAGTGTTGCCAGCGGCATCGGTCGCGGTGGCTTGCAGCACTTCGCCGTCAACTTGTGGCG  >  AE015451/941970‑942419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.