New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1196535 =	32 (0.780)	4 (0.100)	3/320	NT	10.5%	coding (596/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ
	?	AE015451	1196595 =	38 (0.980)					coding (656/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ

TTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1196629‑1196535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGCC  >  AE015451/1196595‑1196824                                                                                                                                                                                                                                                                                                                                       TTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCAT                                                                                                                                       >  1:345058/1‑192       ccGCACCGCCCCTTCCTGCCTGAGCCCTCGCAGCACCTTGACCCCTTCGCCTGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGG                                                                                                                                                                                        <  2:533154/135‑1                                  TCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGG                                                                                                                                                                                        >  1:342564/1‑110                                  TCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGG                                                                                                                                                                                        <  2:342563/110‑1                                                                                          TGCTGCGAGGGCTCAGCCACGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGCC  <  1:392323/236‑1                                                                                             gGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGGGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTG                                                       <  2:501005/179‑1                                                                                                                                                                                                                                                                                                                                       TTCAACCGGCACCGCCCCTTCCTGGCTGAGCCCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1196629‑1196535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGCC  >  AE015451/1196595‑1196824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.