New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1196535 =	32 (0.780)	4 (0.100)	3/320	NT	10.5%	coding (596/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ
	?	AE015451	1196595 =	38 (0.980)					coding (656/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ

CTGATCGACCCGCGAGTTGGGGTTATTACACCGTACCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGCC  >  AE015451/1196396‑1196824                                                                                                                                                                                                        |                                                                                                                                                                                                                                      cTGATCGACCCGCGAGTTGGGGTTATTACCCCGTACCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAgg                                                                                                                                                                                                   <  1:125200/236‑1 (MQ=255)    aTCGACCCGCGAGTTGGGGTTATTACACCGTACCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCg                                                                                                                                                                                                           >  1:738737/1‑225 (MQ=255)                               ccGTACCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGa                                                                                                                                                                                                                                      <  2:234918/171‑1 (MQ=255)                                   aCCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCa                                                                                                                                                                                                                               >  1:605390/1‑174 (MQ=255)                                    cccGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGAccggccg                                                                                                                                                                    >  2:716949/1‑232 (MQ=255)                                     ccGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCggtggt                                                                                                                                                               >  1:419926/1‑236 (MQ=255)                                       ggcggcGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGgtggtg                                                                                                                                                              >  2:462325/1‑235 (MQ=255)                                           atgcccgagccaccggcggctggcaccaccggccggtccttgccctctgcctcacccgcgccttcaaccggcaccgccccttcctggctgagccctcGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGaa                                                                                                                                                                                                     >  1:345058‑M1/98‑192 (MQ=255)                                               aCCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGGGGGCAAGGACCGGCCGGGGGGGCCAgccgcc                                                                                                                                                     >  1:174542/1‑236 (MQ=255)                                                            gactgactGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGc                                                                                                                                         >  1:496313/1‑235 (MQ=255)                                                              ctgactgGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAgg                                                                                                                                                                                        >  1:54677/1‑186 (MQ=255)                                                               tgactgGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTCGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATcc                                                                                                                                     <  1:716950/236‑1 (MQ=255)                                                                gacggGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGACAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCACGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCAt                                                                                                                                       >  2:392322/1‑233 (MQ=255)                                                                    ggCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGc                                                                                                                                   >  2:749483/1‑233 (MQ=255)                                                                     gcgcAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTg                                                                                                                                >  1:361022/1‑235 (MQ=255)                                                                      cgcAGCACCCTCGAACGCATCGCCAGCCTGCTGCGCCCGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGc                                                                                                                                         <  1:122854/225‑1 (MQ=255)                                                                         agcaACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGaa                                                                                                                             <  2:361021/234‑1 (MQ=255)                                                                             aCCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACgaa                                                                                                                       <  1:462326/236‑1 (MQ=255)                                                                                   aaCGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGgtggtg                                                                                                                                                              >  2:756896/1‑191 (MQ=255)                                                                                           gCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCaa                                                                                                            >  2:300189/1‑233 (MQ=255)                                                                                            cctcacccgcgccttcaaccggcaccgccccttcctggctgagccctcGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGa                                                                                                                                                                                                                                      >  1:342564‑M1/49‑110 (MQ=255)                                                                                            cctcacccgcgccttcaaccggcaccgccccttcctggctgagccctcGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGa                                                                                                                                                                                                                                      <  2:342563‑M1/62‑1 (MQ=255)                                                                                            cctcacccgcgccttcaaccggcaccgccccttcctggctgagccctcGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCAGGCGAAGGGGTCAAGGTGCTGCGAGGGCTCAGGCAGGAAGGGGCGGtgcgg                                                                                                                                                                                                           <  2:533154‑M1/89‑3 (MQ=255)                                                                                                    ctgcGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGaa                                                                                                                                                                                                     <  2:586554/135‑1 (MQ=255)                                                                                                    cgccgcCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGa                                                                                                                                                                                          >  2:671479/4‑146 (MQ=255)                                                                                                         ttcaaccggcaccgccccttcctggctgagccctcgcagcaccttgaccacttcgccggcattggcatggcgcaagtagatcacctgggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCAt                                                                                                                                       >  1:345058‑M2/96‑192 (MQ=255)                                                                                                          cAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACggagaa                                                                                                                    >  1:294701/1‑210 (MQ=255)                                                                                                              tCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAAt                                                                                                           <  2:527462/215‑1 (MQ=255)                                                                                                               ccgcaccgccccttcctgcctgagccctcgcagcaccttgaccccttcgcctgcattggcatggcgcaagtagatcacctgggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAgg                                                                                                                                                                                        <  2:533154‑M2/48‑1 (MQ=255)                                                                                                                   cGCCCTCACGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAgg                                                                                                                                                                                        <  2:241324/133‑1 (MQ=255)                                                                                                                             agGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTggcg                                                                       >  1:33738/1‑236 (MQ=255)                                                                                                                                        agcggcagcACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCggg                                                             >  1:741235/1‑235 (MQ=255)                                                                                                                                         gcggcagcACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAg                                                                             >  1:730646/1‑218 (MQ=255)                                                                                                                                          tcgcagcaccttgaccacttcgccggcattggcatggcgcaagtagatcacctgggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAgg                                                                                                                                                                                        <  2:342563‑M2/48‑1 (MQ=255)                                                                                                                                          tcgcagcaccttgaccacttcgccggcattggcatggcgcaagtagatcacctgggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAgg                                                                                                                                                                                        >  1:342564‑M2/63‑110 (MQ=255)                                                                                                                                                             tACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACgaa                                                                                                                       <  2:742778/156‑1 (MQ=255)                                                                                                                                                               cTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTc                                     <  1:749484/236‑1 (MQ=255)                                                                                                                                                                 tGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCg                                    <  1:300190/235‑1 (MQ=255)                                                                                                                                                                       aTGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGcc                             >  1:572223/1‑236 (MQ=255)                                                                                                                                                                          gcAAAGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTg                                                                          <  2:741684/187‑1 (MQ=255)                                                                                                                                                                            aaTGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAggg                                                                                                                                                                                 >  2:128880/1‑83 (MQ=255)                                                                                                                                                                            aaTGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGTCCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAgg                         >  1:720823/1‑235 (MQ=255)                                                                                                                                                                            aaTGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTgg                                           >  1:501006/1‑217 (MQ=255)                                                                                                                                                                            aaTGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAg                          >  1:560280/1‑234 (MQ=255)                                                                                                                                                                                   gagAAGTGGTCAAGGTGCGGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATg                                                                                               <  1:215780/156‑1 (MQ=255)                                                                                                                                                                                      aaGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCTGGTGAGGGAGAGGGCa                                                                                                                                                                               >  1:85181/1‑75 (MQ=255)                                                                                                                                                                                       aGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGGTGAAGGCGCGGGGGAGGCa                                                                                                                                                                                      >  2:143554/1‑67 (MQ=255)                                                                                                                                                                                                  tgctgcGAGGGCTCAGCCACGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGcc  <  1:392323‑M2/230‑1 (MQ=255)                                                                                                                                                                                                     ggcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGGGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTg                                                       <  2:501005‑M2/177‑1 (MQ=255)                                                                                                                                                                                                        gAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGGACCAATGCCGTGGTCATGGTCGGcccc                                                                                      >  1:183256/1‑146 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                                                                                      CTGATCGACCCGCGAGTTGGGGTTATTACACCGTACCCGGCGGCGCACCAGTTGGTGGTGACTGACTGGCGCAGCAACCTCGAACGCATCGCCAGCCTGCTGCGCCAGCTCGACCGCCCTCAAGAGGTACCGGGCAGCGGCAGCACCCAGGTGATCTACTTGCGCCATGCCAATGCCGGCGAAGTGGTCAAGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGTCGGCCCCGACAGCGAGCTGGCGGCGTACCGGGCCATTGTCGAGCAACTGGATATTCGCCGTGCCCAGGTGGTGGTCGAAGCGATCATCGCC  >  AE015451/1196396‑1196824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.