New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1682699 =	32 (0.780)	4 (0.100)	4/318	NT	11.2%	coding (1218/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ
	?	AE015451	1682746 =	33 (0.850)					coding (1265/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ

CTGGCCCCATGGGCCGGCATGGCGCAGGGCCTTGGCCAGGTCGAGGTGGAACTCCTCTACCGCCAGGCTGCCGTCGGACAACAGGCGGCCAGTCAGGTCTTCTTCGCGCAGCTGACGCCGCACCTCTTCGTCGAACGCCTCGGCAAACGCCGAGAAATTAGCCTCTGGCAACGACAACCCGGCAGCCATGGCGTGGCCGCCGAACTTGCTGATCAGCTGCGGGTGGCGCGCGGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1682936‑1682699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccacgCCATGGCTGCCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGCGTTCGACGAAGAGGTGCGGCGTCAGCTGCGCGAAGAAGACCTGACTGGCCGCCTGTTGTCCGACGGCAGCCTGGCGGTAGAGGAGTTCCACCTCGACCTGGCCAAGGCCCTGCGCCATGCCGGCCCATGGGGCCAGCACTTCCCTGAGCCGCTGTTCC  >  AE015451/1682746‑1682958                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGGCCCCATGGGCCGGCATGGCGCAGGGCCTTGGCCAGGTCGAGGTGGAACTCCTCTACCGCCAGGCTGCCGTCGGACAACAGGCGGCCAGTCAGGTCTTCTTCGCGCAGCTGACGCCGCACCTCTTCGTCGAACGCCTCGGCAAACGCCGAGAAATTAGCCTCTGGCAACGACAACCCGGCAGCCATGGCGTGGCCGCCGAACTTGCTGATCAGCTGCGGGTGGCGCGCGGCC                                                                                                                                                                                                                          <  1:102821/235‑1   GGCCCCATGGGCCGGCATGGCGCAGGGCCTTGGCCAGGTCGAGGTGGAACTCCTCTACCGCCAGGCTGCCGTCGGACAACAGGCGGCCAGTCAGGTCTTCTTCGCGCAGCTGACGCCGCACCTCTTCGTCGAACGCCTCGGCAAACGCCGA‑AAATTAGCCTCTGGCAACGACAACCCGGCAGCCATGGCGTGGCCGCCGAACTTGCTGATCAGCTGCGGGTGGCGCGCGGCCACG                                                                                                                                                                                                                       >  1:370822/1‑235                                                                                                                                                                  ccgCTGGCAACGACAACCCGGCAGCCATGGCGTGGCCGCCGAACTTGCTGAGCAGCTGCGGGTTGCGCGCGGCCACGCCATGGCTGCCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTG                                                                                                                                                                       <  2:416132/122‑1                                                                                                                                                                                                  TGGCCGCCGATCTTGCGGTGCAGCTGCGGGTGGCGCGCGGCCACGCCATGGCTGGCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGCGTTCG                                                                                                                                                           <  2:214038/105‑1                                                                                                                                                                                                                     cCAGCTGCGGGTGGCGCGCGGCCACGCCATGGCTGCCGGGTTGCCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGC                                                                                                                                                                <  2:628916/80‑1                                                                                                                                                                                                                              GGTGGCGCGCGGCCACGCCATGGCTGCCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGCGTTCGACGAAGAGGTGCGGCGTCAGCTGCGCGAAGAAGACCTGACTGGCCGCCTGTTGTCCGACGGCAGCCTGGCGGTAGAGGAGTTCCACCTCGACCTGGCCAAGGCCCTGCGCCATGCCGGCCCATGGGGCCAGCACTTCCCTGAGCCGCTGTTCC  <  2:619439/230‑1                                                                                                                                                                                                                                    cCGCGGCCACGCCATGGCTGCCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGTGTTCGACGAAGAGGTGCGGCGTCAGCTGCGCGAAGAAGACCTGACTGGCCGCCTGTTGTCCGACGGCAGCCTGGCGGTAGAGaa                                                                            <  2:468643/149‑3                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGGCCCCATGGGCCGGCATGGCGCAGGGCCTTGGCCAGGTCGAGGTGGAACTCCTCTACCGCCAGGCTGCCGTCGGACAACAGGCGGCCAGTCAGGTCTTCTTCGCGCAGCTGACGCCGCACCTCTTCGTCGAACGCCTCGGCAAACGCCGAGAAATTAGCCTCTGGCAACGACAACCCGGCAGCCATGGCGTGGCCGCCGAACTTGCTGATCAGCTGCGGGTGGCGCGCGGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1682936‑1682699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccacgCCATGGCTGCCGGGTTGTCGTTGCCAGAGGCTAATTTCTCGGCGTTTGCCGAGGCGTTCGACGAAGAGGTGCGGCGTCAGCTGCGCGAAGAAGACCTGACTGGCCGCCTGTTGTCCGACGGCAGCCTGGCGGTAGAGGAGTTCCACCTCGACCTGGCCAAGGCCCTGCGCCATGCCGGCCCATGGGGCCAGCACTTCCCTGAGCCGCTGTTCC  >  AE015451/1682746‑1682958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.