New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1842345	23 (0.560)	4 (0.110)	4/312	NT	15.6%	coding (2449/2754 nt)	gacS	Sensor protein GacS
	?	AE015451	= 1842393	22 (0.580)					coding (2401/2754 nt)	gacS	Sensor protein GacS

CTGCTGCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1842103‑1842345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaggccGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTACACCGTCTGAACGGTGCCTCACGCTATTGCGGCGTG  <  AE015451/1842393‑1842172                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCTGCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGC                                                                                                                                                                                                                                       <  1:352241/236‑1                                                                                               TTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAG                                                                                                                                                                                                                                   >  1:560894/1‑146                                                                                               TTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAG                                                                                                                                                                                                                                   <  2:560893/146‑1                                                                                                                     TCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGACCTGAAGGTACTCGc                                                                                                                                                                                          >  2:35557/1‑164                                                                                                                                                                                                 GCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCCGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCG                                                                                                                                                                >  2:763634/1‑115                                                                                                                                                                                                             AGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCCCAGCCG                                                                   >  1:41701/1‑196                                                                                                                                                                                                                      ATCTGCCTTGCCAGCGGCCAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTACACCGTCTGAACG                         <  1:763635/229‑1                                                                                                                                                                                                                                        CAGGCGCAGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTACACCGTCTGAACGGTGCCTCACGCTATTGCGGCGTG  <  1:618233/234‑1                                                                                                                                                                                                                                               AGGCCGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTACACCGTCTGAACG                         <  1:86304/204‑1                                                                                                                                                                                                                                                 GCCGCGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCATGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTA                                      <  1:179774/189‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCTGCGCCTGGGGATTGTCCTGCTTCAGCAAGGTCTCGCTGCGTTGACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1842103‑1842345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcaggccGAGCTGCTGACCAACGGCGACGAACTGAAGGTACTCGACCCCGAAGAGGGCCTGCGCCTGGCCGCTGGCAAGGCAGATCTGGCCGCTGACATGCTGAGCATGCTGCTGGCCTCCCTGGATACGGACCGCGAAGCCATACGCGCCGCCCGCGCAGCCGATGACCGAAATGGCCTGATCGAGCAGGTACACCGTCTGAACGGTGCCTCACGCTATTGCGGCGTG  <  AE015451/1842393‑1842172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.