New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1842345	23 (0.560)	4 (0.110)	4/312	NT	15.6%	coding (2449/2754 nt)	gacS	Sensor protein GacS
	?	AE015451	= 1842393	22 (0.580)					coding (2401/2754 nt)	gacS	Sensor protein GacS

ACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTT  >  AE015451/1842151‑1842567                                                                                                                                                                                                   |                                                                                                                                                                                                                               acacGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGt                                                                                                                                                                                         >  1:330176/1‑234 (MQ=255)                      cACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcctg                                                                                                                                                                    <  1:618233‑M2/234‑13 (MQ=255)                                        ggCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTtcgtcg                                                                                                                                                                                                 <  2:657250/187‑1 (MQ=255)                                        ggCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTtcgtcg                                                                                                                                                                                                 >  1:657251/1‑187 (MQ=255)                                        ggCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGGTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTc                                                                                                                                                 >  1:615524/1‑235 (MQ=255)                                             cGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcctggccgctggcaaggcagat                                                                                                                                                  <  1:763635‑M2/229‑31 (MQ=255)                                             cGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcct                                                                                                                                                                           <  1:86304‑M2/204‑6 (MQ=255)                                                    aCGTTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGtgtg                                                                                                                                                          <  2:634056/214‑1 (MQ=255)                                                       gtgtACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGtgtg                                                                                                                                                          >  1:590018/1‑211 (MQ=255)                                                          tACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCATGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCGCggc                                                                                                                                                                             <  1:179774‑M2/189‑4 (MQ=255)                                                          tACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTtcgtcg                                                                                                                                                                                                 >  1:417587/1‑169 (MQ=255)                                                          tACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTtcgtcg                                                                                                                                                                                                 <  2:417586/169‑1 (MQ=255)                                                          tACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCAc                                                                                                                                     >  1:590667/1‑229 (MQ=255)                                                                     tCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCgagctgctgaccaacggcgacgacctgaaggtactcgc                                                                                                                                                                                          >  2:35557‑M1/1‑127 (MQ=255)                                                                     tCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTtcgtc                                                                                                                                                                                                  >  2:482261/1‑157 (MQ=255)                                                                                  gTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGc                                                                                                      <  1:209276/236‑1 (MQ=255)                                                                                       cGGCTGGGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCggcctgcgcctggccgctggcaaggcagatctggccgct                                                                                                                                         >  1:41701‑M2/1‑157 (MQ=255)                                                                                                      cgcgTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTgg                                                                                          <  2:618232/228‑1 (MQ=255)                                                                                                                   gcgGTCCGTCTCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTg                                                                                           <  2:409976/214‑1 (MQ=255)                                                                                                                   gcgGTCCGGATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGgtg                                                                                                                                                            <  2:86304/149‑1 (MQ=255)                                                                                                                           tATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCt                                                                                                                        >  1:727025/1‑177 (MQ=255)                                                                                                                                               aTGCTCAGCATGTCAGCGTCCCGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTg                                           <  1:156585/234‑1 (MQ=255)                                                                                                                                               aTGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGCGTCGAGTACCTTCCGTTCGTCGCCGTTGGTCAGCAGCTCCGCCTGCCCctgctg                                                                                                                                                                 >  2:52681/1‑116 (MQ=255)                                                                                                                                                 gCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCgagccgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcctgcgcctggccg                                                                                                                                                                >  2:763634‑M1/1‑51 (MQ=255)                                                                                                                                                             aGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCgagctgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcctgcgcctggccgctggcaaggcagatctggccgctgacatgctgagcatgctgctggcctccctggatacggaccgcgaagccatacgcgccgcccgcccagccg                                                                   >  1:41701‑M1/1‑39 (MQ=255)                                                                                                                                                               cGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTg                                                                                           <  2:619532/170‑1 (MQ=255)                                                                                                                                                                      aTCTGCCTTGCCAGCGGCCAGGCGCAGGCCgagctgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcctgcgcctggccgctggcaaggcagatctggccgctgacatgctgagcatgctgctggcctccctggatacggaccgcgaagccatacgcgccgcccgcgcagccgatgaccgaaatggcctgatcgagcaggtacaccgtctgaacg                         <  1:763635‑M1/229‑200 (MQ=255)                                                                                                                                                                                   gCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAgg                                                                                     >  2:576440/1‑156 (MQ=255)                                                                                                                                                                                   gCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAgg                                                                                     <  1:576441/156‑1 (MQ=255)                                                                                                                                                                                   cgcagcAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAAcgcgc                                                      >  2:740074/6‑187 (MQ=255)                                                                                                                                                                                    cGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCGGCTCggcctgcgcctggccgctggcaaggcagatctggccgctgacatgctgagc                                                                                                                             >  2:763634‑M2/1‑64 (MQ=255)                                                                                                                                                                                      gCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCtg                                                                   >  2:506477/1‑171 (MQ=255)                                                                                                                                                                                        cAGGCGCAGGCCgagctgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcctgcgcctggccgctggcaaggcagatctggccgctgacatgctgagcatgctgctggcctccctggatacggaccgcgaagccatacgcgccgcccgcgcagccgatgaccgaaatggcctgatcgagcaggtacaccgtctgaacggtgcctcacgctattgcggcgtg  <  1:618233‑M1/234‑223 (MQ=255)                                                                                                                                                                                            cgcAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGcaa                                                              >  2:481053/1‑170 (MQ=255)                                                                                                                                                                                               aGGCCgagctgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcctgcgcctggccgctggcaaggcagatctggccgctgacatgctgagcatgctgctggcctccctggatacggaccgcgaagccatacgcgccgcccgcgcagccgatgaccgaaatggcctgatcgagcaggtacaccgtctgaacg                         <  1:86304‑M1/204‑200 (MQ=255)                                                                                                                                                                                                 gCCgcgctgctgaccaacggcgacgaactgaaggtactcgaccccgaagagggcatgcgcctggccgctggcaaggcagatctggccgctgacatgctgagcatgctgctggcctccctggatacggaccgcgaagccatacgcgccgcccgcgcagccgatgaccgaaatggcctgatcgagcaggta                                      <  1:179774‑M1/189‑187 (MQ=255)                                                                                                                                                                                                   ccTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCcatggcatgg                               >  1:230838/1‑194 (MQ=255)                                                                                                                                                                                                   |                                                                                                                                                                                                                               ACACGCTGCCCGTAACTGCGGCACGCCGCAATAGCGTGAGGCACCGTTCAGACGGTGTACCTGCTCGATCAGGCCATTTCGGTCATCGGCTGCGCGGGCGGCGCGTATGGCTTCGCGGTCCGTATCCAGGGAGGCCAGCAGCATGCTCAGCATGTCAGCGGCCAGATCTGCCTTGCCAGCGGCCAGGCGCAGGCCCTCTTCGGGGTCGAGTACCTTCAGTTCGTCGCCGTTGGTCAGCAGCTCGGCCTGCGCCTGCTGCGGTGTGCCCAGGCTCAGGCCGGTCCACTTCATCACCACCTGGGCCAGTTGCCGTTCGCTGATCGGTTTGGTCAGGTAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTT  >  AE015451/1842151‑1842567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.