New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2057883 =	30 (0.730)	4 (0.110)	4/310	NT	10.7%	intergenic (+99/+29)	PP_1832/PP_1833	putative Oxidase/conserved protein of unknown function
	?	AE015451	2057988 =	39 (1.030)					coding (227/303 nt)	PP_1833	conserved protein of unknown function

CCCGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2058123‑2057883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcctcttcgGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCGGGGCGGGCTTTGGTATTCACCTGATAGGCCGAAAATACCGATGCGAACTTTTGCTGGATGAGGTCCATATCAACTCC  >  AE015451/2057988‑2058193                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCCGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCT                                                                                                                                                                                                                     >  1:421357/1‑236 CCCGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCT                                                                                                                                                                                                                     >  1:569575/1‑236 CCCGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGC                                                                                                                                                                                                                       >  2:624052/1‑234   CGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCT                                                                                                                                                                                                                   <  1:759456/236‑1                                     CAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCG                                                                                                                                                                                                                >  2:559615/1‑205                                                                                                                   GTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAA                                                                                                                           >  2:260602/1‑212                                                                                                                                              AGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCGGG                                                                             <  1:260603/231‑1                                                                                                                                                                  ATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCGGGGCGGGCTTTGGTATTCACCTGATAG                                                    >  1:565713/1‑236                                                                                                                                                                                                                            ATTGCCTGAACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCGGGGCGGGCTTTGGTATTCACCTGATAGGCCGAAAATACCGATGCGAACTTTTGCTGGATGAGGTCCATATCAACTCa  >  1:686476/1‑227                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCCGCCCCGATGGCGGTGTACTGCTTACCCTGCGCGCAGCGGATGGCAAGGTTACCCGCCGGGTGCTGACCTACGGGCAATTGCACAGTGCCGAACAGCTGTCCTGGGCGATCAGTGCCATCCGTCGTGACCTGGCCGAAGAGGCCAGTGAATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2058123‑2057883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcctcttcgGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCGGGGCGGGCTTTGGTATTCACCTGATAGGCCGAAAATACCGATGCGAACTTTTGCTGGATGAGGTCCATATCAACTCC  >  AE015451/2057988‑2058193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.