New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2057883 =	30 (0.730)	4 (0.110)	4/310	NT	10.7%	intergenic (+99/+29)	PP_1832/PP_1833	putative Oxidase/conserved protein of unknown function
	?	AE015451	2057988 =	39 (1.030)					coding (227/303 nt)	PP_1833	conserved protein of unknown function

ACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCG  >  AE015451/2057677‑2058116                                                                                                                                                                                                               |                                                                                                                                                                                                                                          tgagttgatatggacctcatccagcaaaagttcgcatcggtattttcggcctatcaggtgaataccaaagcccgccccgatggcggtgtactgcttaccctgcgcgcagcggatggcaaggttacccgccgggtgctgacctacgggcaattgcacagtgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggcCGAAGAGGCCAGTTCAGGCAAt                                                                                                                                                                                                                      >  1:686476‑M1/207‑228 (MQ=255)    ccGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAAt                                                                                                                                                                                                                      <  1:337698/225‑1 (MQ=255)         ttGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCCAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGCAGAGGCCAGTTCAGGCCAGACAccc                                                                                                                                                                                                                >  1:2748/1‑226 (MQ=255)          tGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCACAGCg                                                                                                                                                                                                         >  2:498787/1‑232 (MQ=255)            ccTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAg                                                                                                                                                                                                                                <  2:717253/207‑1 (MQ=255)                gCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTc                                                                                                                                                                                                                             <  1:542323/206‑1 (MQ=255)                                gctgCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAg                                                                                                                                                                                                                                <  2:153280/184‑1 (MQ=255)                                                   ggCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCg                                                                                                                                                                                                 >  2:537058/1‑199 (MQ=255)                                                   ctatcaggtgaataccaaagcccgccccgatggcggtgtactgcttaccctgcgcgcagcggatggcaaggttacccgccgggtgctgacctacgggcaattgcacagtgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggcCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                                                                                                            >  1:565713‑M1/157‑236 (MQ=255)                                                               gggCGATGTGCCTGCGCGGGCTTTTCTTGGTGTCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGGTGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTc                                                                                                                                                                                                                             <  1:250471/159‑1 (MQ=255)                                                                       tgACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGcc                                                                                                                                         >  1:690773/1‑235 (MQ=255)                                                                            cccgatggcggtgtactgcttaccctgcgcgcagcggatggcaaggttacccgccgggtgctgacctacgggcaattgcacagtgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggcCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCct                                                                                                                                        <  1:260603‑M1/100‑1 (MQ=255)                                                                                  gCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCGTAAGGGGGGCGCAACGGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCa                                                                                                                                                                                                                                 >  2:467069/1‑136 (MQ=255)                                                                                  gCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGa                                                                                                                                                                                                                                         >  1:599694/1‑128 (MQ=255)                                                                                        cTTGTTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAg                                                                                                                                                                                                                           <  2:22012/136‑1 (MQ=255)                                                                                          tGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAg                                                                                                                                                                                                     >  2:207025/1‑156 (MQ=255)                                                                                                       cTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATc                                                                                                        <  1:498788/236‑1 (MQ=255)                                                                                                              cGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgag                                                                                                                                                              <  1:352228/175‑1 (MQ=255)                                                                                                                          ttacccgccgggtgctgacctacgggcaattgcacagtgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggcCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCAc                                                                                                             >  2:260602‑M1/86‑212 (MQ=255)                                                                                                                                        aCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCacgac                                                                                                                      <  1:207026/189‑1 (MQ=255)                                                                                                                                          ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGcc                                                                                   >  1:143157/1‑221 (MQ=255)                                                                                                                                            gCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa                                                                                                <  1:302809/207‑1 (MQ=255)                                                                                                                                                          tGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGGTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCCTCGGCCCggc                                                                                                                            >  1:683601/1‑164 (MQ=255)                                                                                                                                                           gcgcGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGCGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa                                                                                                >  1:625720/1‑192 (MQ=255)                                                                                                                                                           gcgcGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCa                                                             >  2:569574/1‑227 (MQ=255)                                                                                                                                                           gcgcGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCcggc                                                    >  1:624053/1‑236 (MQ=255)                                                                                                                                                             gcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATc                                                                                                                                                                 >  2:144055/1‑125 (MQ=255)                                                                                                                                                             gcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCgg                                                                                     >  1:237324/1‑201 (MQ=255)                                                                                                                                                             gcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCaggcgg                                                  >  1:52737/1‑236 (MQ=255)                                                                                                                                                               gATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCcggcgg                                                  >  1:505606/1‑234 (MQ=255)                                                                                                                                                                       aGGGCGGCGCAACCGTCGGTCGTAGGAGCGTGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa                                                                                                <  1:62546/180‑1 (MQ=255)                                                                                                                                                                         ggcggcGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgag                                                                                                                                                              >  2:573804/1‑116 (MQ=255)                                                                                                                                                                                cAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGCGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCGCTGCAGCATCGAGATGACCGGCAACTCACTGGCct                                                                                                                                        >  2:57293/1‑131 (MQ=255)                                                                                                                                                                                cAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCt                                >  1:728659/1‑235 (MQ=255)                                                                                                                                                                                     gtcggtcgTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTgcgcgc                          <  1:199574/236‑1 (MQ=255)                                                                                                                                                                                                          aCCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGTATGGCACTGCTCGCCCAGGACAGCTGtt                                                                                        >  1:152305/1‑153 (MQ=255)                                                                                                                                                                                                          aCCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTa                    <  1:82037/221‑1 (MQ=255)                                                                                                                                                                                                             cgcgAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCg  >  1:477275/1‑236 (MQ=255)                                                                                                                                                                                                               CGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTg                               >  2:559615‑M1/1‑205 (MQ=255)                                                                                                                                                                                                               |                                                                                                                                                                                                                                          ACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCACTGTGCAATTGCCCGTAGGTCAGCACCCGGCGGGTAACCTTGCCATCCGCTGCGCGCAGGGTAAGCAGTACACCGCCATCG  >  AE015451/2057677‑2058116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.