New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3398276 = | 48 (1.170) | 4 (0.100) | 4/318 | NT | 7.8% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
? | AE015451 | 3398411 = | 49 (1.270) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II |
TGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3398494‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGC > AE015451/3398411‑3398523 TGGAAGCTCTCGACCTGGGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACC < 2:445500/211‑1 CATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACA > 1:385703/1‑137 CATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACA < 2:385702/137‑1 CGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGC < 1:353786/139‑1 CGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGC > 2:353785/1‑139 TGGAAGCTCTCGACCTGTGCCCCCAGCTCCTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3398494‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGC > AE015451/3398411‑3398523 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |