New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3663643 =	22 (0.540)	4 (0.110)	4/304	NT	16.4%	coding (267/891 nt)	PP_3227	Transcriptional regulator, LysR family
	?	AE015451	3663659 =	21 (0.570)					coding (251/891 nt)	PP_3227	Transcriptional regulator, LysR family

ACCAACCTTGCCGCCGAGGCCCTGCAACTGACGCAGCCGGCCATTACCCGCCGGGTGCAGAATTTCGAGGAAGACCTCGGCGCCACCCTCCTCGACCGCAACACCAAGCCGCTCAAGCCCACCCCCATGGGCTTGCGGGTCTATGAGCAGTGCAAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGCGCGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3663858‑3663643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacggcgcgccgtcgTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTGCACTGCTCATAGACCCGCAAGCCCATGGGGGTGGGCTTGAGCGGCTTGGTGTTGCGGTCGAGGAGGGTGGCGCCGAGGTCTTCCTCGAAATTCTGCACCCGGCGGGTAATGGCCGGCTGCGTCAGTTGCAGGGCCTCGGCGGCAAGGTTGGTGGACTGGCAACGAATGACGGCGA  >  AE015451/3663659‑3663881                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCAACCTTGCCGCCGAGGCCCTGCAACTGACGCAGCCGGCCATTACCCGCCGGGTGCAGAATTTCGAGGAAGACCTCGGCGCCACCCTCCTCGACCGCAACACCAAGCCGCTCAAGCCCACCCCCATGGGCTTGCGGGTCTATGAGCAGTGCAAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGCCGG                                                                                                                                                                                                                                           >  2:168468/1‑206                                                                                                                     GCCCACCCCCATGGGCTTGCGGGTCTATGAGCAGTGCAAGGCGAGCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGCGCGCCGTCGTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTG                                                                                                                                                                                 <  2:738717/148‑1                                                                                                                                                       TGCAAGGCGATCCTGCGCGAGATAGCCTCGCTGCGTGAACTGGTAGCCAACGACGGCGCGCCGTCGTTGGCTACCAGTTCACGCAGCGAGTCTATCT                                                                                                                                                                                                  <  2:529666/97‑1                                                                                                                                                         CAAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGC                                                                                                                                                                                                                                          >  1:672056/1‑55                                                                                                                                                          AAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGC                                                                                                                                                                                                                                          >  1:232972/1‑54                                                                                                                                                          AAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGC                                                                                                                                                                                                                                          <  2:232971/54‑1                                                                                                                                                                    TGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCATCGACGGCGCGCCGTCTTTGGCTGCCAGTTCACGCGGCGAGTCTATCTCGCGCAGGATCGACTTGCACGGCTCATAGACg                                                                                                                                                                  >  1:680711/1‑115                                                                                                                                                                                     CTGCGTGAACTGGTAGCCAACGACGGCGCGCCGTCGTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTGCACTGCTCATAGACCCGCAAGCCCATGGGGGGGGGCTTGGGCGGCTTGGTGTTGCGGTCGAGGAGGGTGGCGCCGA                                                                                                     >  2:382454/1‑160                                                                                                                                                                                                              GCGCGCCGTCGTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTGCACTGCTCATAGACCCGCAAGCCCATGGGGGTGGGCTTGAGCGGCTTGGTGTTGCGGTCGAGGAGGGTGGCGCCGAGGTCTTCCTCGAAATTCTGCACCCGGCGGGTAATGGCCGGCTGCGTCAGTTGCAGGGCCTCGGCGGCAAGGTTGGTGGACTGGCAACGAATGACGGCGA  >  2:544090/1‑234                                                                                                                                                                                                                  GCCGTCGTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTG                                                                                                                                                                                 >  2:672055/1‑55                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCAACCTTGCCGCCGAGGCCCTGCAACTGACGCAGCCGGCCATTACCCGCCGGGTGCAGAATTTCGAGGAAGACCTCGGCGCCACCCTCCTCGACCGCAACACCAAGCCGCTCAAGCCCACCCCCATGGGCTTGCGGGTCTATGAGCAGTGCAAGGCGATCCTGCGCGAGATAGACTCGCTGCGTGAACTGGTAGCCAACGACGGCGCGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3663858‑3663643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacggcgcgccgtcgTTGGCTACCAGTTCACGCAGCGAGTCTATCTCGCGCAGGATCGCCTTGCACTGCTCATAGACCCGCAAGCCCATGGGGGTGGGCTTGAGCGGCTTGGTGTTGCGGTCGAGGAGGGTGGCGCCGAGGTCTTCCTCGAAATTCTGCACCCGGCGGGTAATGGCCGGCTGCGTCAGTTGCAGGGCCTCGGCGGCAAGGTTGGTGGACTGGCAACGAATGACGGCGA  >  AE015451/3663659‑3663881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.