New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4320150 =	50 (1.220)	3 (0.080)	3/324	NT	5.3%	coding (615/627 nt)	PP_3791	Site‑specific recombinase, phage integrase family
	?	AE015451	4320231 =	58 (1.470)					coding (534/627 nt)	PP_3791	Site‑specific recombinase, phage integrase family

TCAGTGCATCTCTCCACCCGGCAGTACGCCCGAATGGTCAAAGCGTGGATAAAGTCTATTGGGCTAGATCCTGCTATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4320386‑4320150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcagGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAGCCGGCTTGGGAAAAGACAATCCTCGCTGTGGAGTTGGGCTTGATGTATCCAGGCCTGTAGGGCCAGTC  >  AE015451/4320231‑4320463                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCAGTGCATCTCTCCACCCGGCAGTACGCCCGAATGGTCAAAGCGTGGATAAAGTCTATTGGGCTAGATCCTGCTATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCA                                                                                                                                                                                                                                            <  1:115139/236‑1                                                                       CTGCTATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGGTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCA                                                                                                                                                                                                                                            <  1:763251/166‑1                                                                           TATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAG                                                                                                                                                                                                                                                >  1:431115/1‑158                                                                           TATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAG                                                                                                                                                                                                                                                <  2:431114/158‑1                                                                                                                                      AGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCAGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGT                                                                                                        >  1:417675/1‑235                                                                                                                                                                                            TGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCAGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCT                                                                                                                        >  1:8542/1‑165                                                                                                                                                                                                                    ATGACGCATTGGAGATGGCAGAGCAGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAGCCGGCTTGGGAAAAGACAATCCTCGCTGTGGAGTTGGGCTT                             <  2:417674/232‑1                                                                                                                                                                                                                                            AGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCGCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAGCCGGCGTGGGAAc                                                         >  2:210850/1‑179                                                                                                                                                                                                                                            AGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAGCCGGCTTGGGAAAAGACAATCCTCGCTGTGGAGTTGGGCTTGATGTATCCAGGCCTGTAGGGCCAGTC  >  1:456594/1‑235                                                                                                                                                                                                                                            AGGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAG                                                                      >  2:561845/1‑167                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCAGTGCATCTCTCCACCCGGCAGTACGCCCGAATGGTCAAAGCGTGGATAAAGTCTATTGGGCTAGATCCTGCTATGTACGGCACCCACACGATGAGACGTACAAAGGCATCGCTGATCTATCGCAGGACAAAGAACTTGAGAGCAGTTCAGCTCCTGCTCGGCCATACAAAGCTTGAAAGCACGGTGCGATACCTGGGCATTGAAGTCGATGACGCATTGGAGATGGCAGAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4320386‑4320150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcagGAGCTGAACTGCTCTCAAGTTCTTTGTCCTGCGATAGATCAGCGATGCCTTTGTACGTCTCATCGTGTGGGTGCCGTACATAGCAGGATCTAGCCCAATAGACTTTATCCACGCTTTGACCATTCGGGCGTACTGCCGGGTGGAGAGATGCACTGAGGCGTGTAGCCGGCTTGGGAAAAGACAATCCTCGCTGTGGAGTTGGGCTTGATGTATCCAGGCCTGTAGGGCCAGTC  >  AE015451/4320231‑4320463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.