New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4656864 =	41 (1.000)	3 (0.080)	3/320	NT	7.4%	coding (257/678 nt)	nuoB	NADH‑quinone oxidoreductase subunit B
	?	AE015451	4656948 =	36 (0.920)					coding (341/678 nt)	nuoB	NADH‑quinone oxidoreductase subunit B

GACCCCCTGAACGACCGAGTAGATGTCGTACATGCCACCGGAGTTGGCGCACGAACCCATGGAAATGACCCATTTCGGCTCGAGCATCTGCTCGTAGAGGCGCTGGATGATCGGCGCCATCTTCACGAAGCAGGTACCGGCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4657057‑4656864 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccgaTCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTCCATGGGTTCGTGCGCCAACTCCGGTGGCATGTACGACATCTACTCGGTCGTTCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTATGTGCCTGGCTGCCCGCCACGCCCTGAGGCTTTCCTGCAAGGCTTGATGCTGCTGCAGGAGTCGATCGGCCAAGAACGACGCCCGCTTTCCTGGGT  >  AE015451/4656948‑4657179                                                                                                                                                                                                                                                                                                                                                                                                                                            GACCCCCTGAACGACCGAGTAGATGTCGTACATGCCACCGGAGTTGGCGCACGAACCCATGGAAATGACCCATTTCGGCTCGAGCATCTGCTCGTAGAGGCGCTGGATGATCGGCGCCATCTTCACGAAGCAGGTACCGGCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCC                                                                                                                                                                                                                                            >  1:9001/1‑192                                                                            CGGCTCGAGCATCTGCTCGTAGAGGCGCTGGATGATCGGCGCCATCTTCACGAAGCAGGTACCGGCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGA                                                                                                                                                                                                                                          >  2:301555/1‑119                                                                             tGCTCGAGCATCTGCTCGTAGAGGCGCTGGATGATCGGCGCCATCTTCACGAAGCAGGTACCGGCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTC                                                                                                                                                                                         <  1:342442/166‑1                                                                                 CGAGCATCTGCGCGTAGAGGCGCTGGAGGATCGGCGCCATCTTCACGAAGCAGGTACCGGCACTGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGG                                                                                                                                                                                                 <  1:581308/155‑1                                                                                                              ATCGGCGCCGTCTTCACGAAGCAGGTACCGCCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTT                                                                                                                                                                                          <  2:660363/133‑1                                                                                                                                                                                               CCGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTCCATGGGTTCGTGCGCCAACTCCGGTGGCATGTACGACATCTACTCGGTCGTTCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTATGTGCCTGGCTGCCCGCCACGCCCTGAGGCTTTCCTGCAAGGCTTGATGCTGCTGCAGGAGTC                                   <  1:716545/203‑1                                                                                                                                                                                                CGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTCCATGGGTTCGTGCGCCAACTCCGGTGGCATGTACGACATCTACTCGGTCGTTCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTATGTGCCTGGCTGCCCGCCACGCCCTGAGGCTTTCCTGCAAGGCTTGATGCTGCTGCAGGAGTCGATCGGCCAAGAACGACGCCCGCTTTCCTGGGc  >  1:224855/1‑234                                                                                                                                                                                                CGATCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTCCATGGGTTCGTGCGCCAACTCCGGTGGCATGTACGACATCTACTCGGTCGTTCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTATGTGCCTGGCTGCCCGCCACGCCCTGAGGCTTTC                                                                <  2:547627/173‑1                                                                                                                                                                                                                                                                                                                                                                                                                                            GACCCCCTGAACGACCGAGTAGATGTCGTACATGCCACCGGAGTTGGCGCACGAACCCATGGAAATGACCCATTTCGGCTCGAGCATCTGCTCGTAGAGGCGCTGGATGATCGGCGCCATCTTCACGAAGCAGGTACCGGCAATGACCATGAAGTCGGCCTGACGCGGCGAGGCCCGGATGACTTCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4657057‑4656864 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccgaTCATCCAGCGCCTCTACGAGCAGATGCTCGAGCCGAAATGGGTCATTTCCATGGGTTCGTGCGCCAACTCCGGTGGCATGTACGACATCTACTCGGTCGTTCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTATGTGCCTGGCTGCCCGCCACGCCCTGAGGCTTTCCTGCAAGGCTTGATGCTGCTGCAGGAGTCGATCGGCCAAGAACGACGCCCGCTTTCCTGGGT  >  AE015451/4656948‑4657179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.