New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4933879	30 (0.730)	6 (0.160)	6/304	NT	17.9%	coding (570/1308 nt)	flhF	Flagellar biosynthesis protein FlhF
	?	AE015451	= 4933863	28 (0.760)					coding (586/1308 nt)	flhF	Flagellar biosynthesis protein FlhF

TCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4933661‑4933879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggcctggcgcATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGTATCGGCGCTCAGGAACAGCTCAAGAC  <  AE015451/4933863‑4933649                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCTGAGCGCCGTTACGGAATCTGTCCATGCTCACCAGCGCCAGGTTCTTCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGTCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCA                                                                                                                                                                                                                                   <  2:702969/209‑1                             TGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATG                                                                                                                                                                                                                                        <  2:311648/176‑1                                                                       AGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCATGCTGCTGGC                                                                                                                                                                                                              <  1:348685/160‑1                                                                       AGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCATGCTGCTGGC                                                                                                                                                                                                              >  2:348684/1‑160                                                                       AGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCG                                                                                                                                                                                                                          >  1:517965/1‑148                                                                                                                                                           GCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGA                                                                                                                  >  2:646698/1‑168                                                                                                                                                              CGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCCGCATGCGCCAGGCCCGGCGCCTGCTGCTGGCTCACCTGGCACGGATGATCGAAGTGCCTGAAGTCGAGCCGATCGCAGAGGGTGGGGcc                                                                                                                                                    >  2:551174/1‑129                                                                                                                                                                ATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGA                                                                                                                                                   >  1:485007/1‑130                                                                                                                                                                              GATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCATGCTGCTGGCGCACTTG                                                                                                                                                                                                       <  2:59970/64‑1                                                                                                                                                                                                         CATGCGCCAGGCCTGGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGTATCGGCGCTCAGGAACAGCTCAAGAC  >  1:277661/1‑234                                                                                                                                                                                                           gGCGCCAGGCCTGGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGTGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCT                                                                                    <  2:36816/149‑1                                                                                                                                                                                                               CCAGGCCTGGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGTAT                          <  1:501404/204‑1                                                                                                                                                                                                                       GGCGCATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCTACGTGCTCAAGTACGGCGCGCAGA                                                            <  1:5549/162‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4933661‑4933879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggcctggcgcATGCTGCTGGCTCACTTGGCACGGATGATCGAAGTGCCTGAAATCGAGCCGATCGAAGAGGGTGGGGTGATCGCCATGGTCGGCCCGGCGGGCATGGGCAAGACCACCACCCTGGCCAAGCTGGCCGCGCGCTACGTGCTCAAGTACGGCGCGCAGAACCTGGCGCTGGTGAGCATGGACAGCTTCCGTATCGGCGCTCAGGAACAGCTCAAGAC  <  AE015451/4933863‑4933649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.