New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4933879	30 (0.730)	6 (0.160)	6/304	NT	17.9%	coding (570/1308 nt)	flhF	Flagellar biosynthesis protein FlhF
	?	AE015451	= 4933863	28 (0.760)					coding (586/1308 nt)	flhF	Flagellar biosynthesis protein FlhF

GTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGC  >  AE015451/4933649‑4934094                                                                                                                                                                                                                       |                                                                                                                                                                                                                                        gTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgccaggcctggcgcatg                                                                                                                                                                                                                      >  1:277661‑M2/1‑215 (MQ=255)             tCCTGAGCGCCGTTACGGAATCTGTCCATGCTCACCAGCGCCAGGTTCTTCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGTCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCA                                                                                                                                                                                                                                   <  2:702969‑M1/209‑1 (MQ=255)               cTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCCCCTCGATCCcgg                                                                                                                                                                                                         >  2:360325/1‑233 (MQ=255)                         aTACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgccaggcctgg                                                                                                                                                                                                                            <  1:501404‑M2/204‑14 (MQ=255)                                     tCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCggg                                                                                                                                                                                 <  1:587122/235‑1 (MQ=255)                                         tGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATG                                                                                                                                                                                                                                        <  2:311648‑M1/176‑1 (MQ=255)                                           cTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGctc                                                                                                                                                                                                                    >  1:299178/1‑194 (MQ=255)                                                cAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTc                                                                                                                                                                                               <  2:671816/210‑1 (MQ=255)                                                  gcgcCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGa                                                                                                                                                                    >  1:462959/1‑235 (MQ=255)                                                   cgcCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACa                                                                                                                                                                  <  1:567023/236‑1 (MQ=255)                                                      cAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGc                                                                                                                                                               >  1:281956/1‑236 (MQ=255)                                                           tCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgcc                                                                                                                                                                                                                                    <  1:5549‑M2/162‑6 (MQ=255)                                                           tCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGc                                                                                                                                                                                >  1:636286/1‑214 (MQ=255)                                                                    cGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCACGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGc                                                                                                                                                                                <  1:83481/205‑1 (MQ=255)                                                                                 gTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCCAGTGAGCCAGCAGCACGCGCCCGGCCTGGCGCGGCCCTTCGAt                                                                                                                                                                                                              >  2:83481/1‑162 (MQ=255)                                                                                   aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggc                                                                                                                                                                                                              >  2:348684‑M1/1‑149 (MQ=255)                                                                                   aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggc                                                                                                                                                                                                              <  1:348685‑M1/160‑12 (MQ=255)                                                                                   aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCG                                                                                                                                                                                                                          >  1:517965‑M1/1‑148 (MQ=255)                                                                                   aGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCACATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgccaggcctggcgcc                                                                                                                                                                                                                        <  2:36816‑M2/150‑18 (MQ=255)                                                                                        gcgGCCAGCTTGGCCAGGGTGGTGGTCTTGCCGATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTcggcg                                                                                                                                                                                                       <  1:314833/162‑1 (MQ=255)                                                                                                                 tCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgccaggcctggcgcatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagc                                                                                                                                                                        >  2:646698‑M2/1‑103 (MQ=255)                                                                                                                      cccATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTcc                                                                                                <  1:360326/235‑1 (MQ=255)                                                                                                                      cccATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGGTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTcc                                                                                                >  1:507106/1‑235 (MQ=255)                                                                                                                        cATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTCAGCCAGCCGCCTGCGCCAGGCCTGGCGCGGCCCCTCgct                                                                                                                                                                                                              >  2:104387/1‑121 (MQ=255)                                                                                                                           gCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGcc                                                                                           >  1:324145/1‑235 (MQ=255)                                                                                                                             ccgccgGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTcggcggg                                                                                                                                                                                                     >  1:147321/1‑126 (MQ=255)                                                                                                                              cgccgGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCCCGCTTCCATCTTCCTCGAGCATCCGTGCCGCGCAAGCCAGCAGCGTCAgcctggcctgc                                                                                                                                                                                                                            >  1:516755/1‑102 (MQ=255)                                                                                                                                        aCCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGtt                                                                              >  1:429126/1‑235 (MQ=255)                                                                                                                                            tGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTcggcg                                                                                                                                                                                                       >  1:103546/1‑110 (MQ=255)                                                                                                                                                  tCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATgcgccaggcctggcgcatgctgctggctcacttggcacggatgatcgaagtgcctgaaat                                                                                                                                                                             >  1:485007‑M2/1‑70 (MQ=255)                                                                                                                                                   ggccccaccctcTGCGATCGGCTCGACTTCAGGCACTTCGATCATCCGTGCCAGGTGAGCCAGCAGCAGgcgccgggcctggcgcatgcggctggctcacttggcacggatgatcgaagtgcctgaaatcg                                                                                                                                                                           >  2:551174‑M2/3‑69 (MQ=255)                                                                                                                                                             tctTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCggg                                                                                                                                                                                 <  2:201985/115‑1 (MQ=255)                                                                                                                                                                    tCGGCTCGATTTCAGTCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCcag                                                                    <  2:724222/217‑1 (MQ=255)                                                                                                                                                                      ggCTCGATTTCAGGCACTGCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCa                                                                                                         <  2:580278/178‑1 (MQ=255)                                                                                                                                                                       gCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaaga                                                                                                                  >  2:646698‑M1/1‑65 (MQ=255)                                                                                                                                                                          cGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCCGCATGCGCCAGGCCCGGCGCctgctgctggctcacctggcacggatgatcgaagtgcctgaagtcgagccgatcgcagagggtggggcc                                                                                                                                                    >  2:551174‑M1/1‑62 (MQ=255)                                                                                                                                                                            aTTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtga                                                                                                                                                   >  1:485007‑M1/1‑60 (MQ=255)                                                                                                                                                                                          gATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCatgctgctggcgcacttg                                                                                                                                                                                                       <  2:59970‑M1/64‑19 (MQ=255)                                                                                                                                                                                          gATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCCGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCCtg                                                                                                                   >  1:211778/1‑148 (MQ=255)                                                                                                                                                                                                    gCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAgg                                                                                                                                                                                                 >  2:198377/1‑60 (MQ=255)                                                                                                                                                                                                      cAAGTGCGCCAGCAGCATgcgccaggcctggcgcatgctgctggctcacttggcacggatgatc                                                                                                                                                                                           <  2:59970‑M2/64‑47 (MQ=255)                                                                                                                                                                                                      cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCCGGTCCAGCAGCTCGCGGGCGATCGGCCCGGGCAGGCCGATGCGCTGCAGGCGGCGCCCAAGGGTGGc                                                                                                                                >  1:232034/1‑123 (MQ=255)                                                                                                                                                                                                      cAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGa                                                  >  1:1954/1‑201 (MQ=255)                                                                                                                                                                                                       aaGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGt               >  1:63836/1‑235 (MQ=255)                                                                                                                                                                                                            aGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAAcc                                                                                   <  2:579343/162‑1 (MQ=255)                                                                                                                                                                                                             gCCAGCAGCATgcgccaggcctggcgcatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgct                                                                                    <  1:348685‑M2/160‑150 (MQ=255)                                                                                                                                                                                                             gCCAGCAGCATgcgccaggcctggcgcatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgct                                                                                    >  2:348684‑M2/1‑11 (MQ=255)                                                                                                                                                                                                             gCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCg         >  1:500793/1‑235 (MQ=255)                                                                                                                                                                                                                  cagcaTGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCgca    <  1:404144/235‑1 (MQ=255)                                                                                                                                                                                                                     caTGCGCCAGGCCTGGCGCatgctgctggctcacttggcacggatgatcgaagtgcctgaaatcgagccgatcgaagagggtggggtgatcgccatggtcggcccggcgggcatgggcaagaccaccaccctggccaagctggccgcgcgctacgtgctcaagtacggcgcgcagaacctggcgctggtgagcatggacagcttccgtatcggcgctcaggaacagctcaagac  >  1:277661‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                                        GTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGCGCGGCCAGCTTGGCCAGGGTGGTGGTCTTGCCCATGCCCGCCGGGCCGACCATGGCGATCACCCCACCCTCTTCGATCGGCTCGATTTCAGGCACTTCGATCATCCGTGCCAAGTGAGCCAGCAGCATGCGCCAGGCCTGGCGCGGCTCTTCGATCTCGGCGGTCAGGTCCAGCAGCTCGCGGGCGATCGGCCCGGACAGGCCGATGCGCTGCAGGCGGCGCCAAAGGTTGGCCTGCTGCGGCTTGCTGCCCTGCAGCTGATTCCAGGCCAGCGAACCGAGTTGCACTTCCAGCAGCTCGCGCAGGCCCGACAGCTCGGAGCGCATGGCATCGAACAGGCGTGGGTCAACCGGCGCAGC  >  AE015451/4933649‑4934094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.