New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6051932 =	37 (0.910)	3 (0.080)	3/314	NT	8.0%	coding (225/732 nt)	PP_5304	putative Lipoprotein
	?	AE015451	6052033 =	34 (0.890)					coding (326/732 nt)	PP_5304	putative Lipoprotein

CTTCCAGTTACCACCCAGGTAGGCCTGGTAAAGCGCTTTCTCGAAGCTGCTGCCCAGTGGTGCATTGGCTGCAGCCTGCGCCTTGGCGCGCACGAAGGTTTGCTTGGTGCCGTTCTGGTCGACGGCCAGCAGCTCGTCGCCATCGAGCGAAAGCTGCTCGGTCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6052151‑6051932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccgtcgACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCC  >  AE015451/6052033‑6052225                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCCAGTTACCACCCAGGTAGGCCTGGTAAAGCGCTTTCTCGAAGCTGCTGCCCAGTGGTGCATTGGCTGCAGCCTGCGCCTTGGCGCGCACGAAGGTTTGCTTGGTGCCGTTCTGGTCGACGGCCAGCAGCTCGTCGCCATCGAGCGAAAGCTGCTCGGTCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGGCCGTCGACCAGAACGGCACCA                                                                                                                                                                                    <  1:339191/235‑1             ACCCAGGTAGGCCTGGTAAAGCGCTTTCTCGAAGCTGCTGCCCAGTGGTGCATTGGCTGCAGCCTGCGCCTTGGCGCGCACGAAGGTTTGCTTGGTGCCGTTCTGGTCGACGGCCAGCAGCTCGTCGCCATCGAGCGAAAGCTGCTCGGGCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCATCTGGCCGTC                                                                                                                                                                                                    >  1:142162/1‑207                                                                                                         TGGTGGCGTTCTGGTCGGCGGCCAGCAGCTCGTCGCCATCGAGCGAAAGCTGCTCGGTCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGG                                                                                                                                                                                                         <  2:6258/110‑1                                                                                                                                             CATCGAGCGAAAGCTGCTCGGTCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAA                                                             <  2:587443/214‑1                                                                                                                                                                 GTCTGCCCGCCTTGGAAGCGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTC                                                                                                                                                                         <  1:315975/86‑1                                                                                                                                                                                                                            GACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCC  <  2:262275/194‑1                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCCAGTTACCACCCAGGTAGGCCTGGTAAAGCGCTTTCTCGAAGCTGCTGCCCAGTGGTGCATTGGCTGCAGCCTGCGCCTTGGCGCGCACGAAGGTTTGCTTGGTGCCGTTCTGGTCGACGGCCAGCAGCTCGTCGCCATCGAGCGAAAGCTGCTCGGTCTGGCCGCCTTGGAAACGGGCCTGCCATTGCTTTTCATTGGCGCTCAGCTGGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6052151‑6051932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccgtcgACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCC  >  AE015451/6052033‑6052225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.