New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6051932 =	37 (0.910)	3 (0.080)	3/314	NT	8.0%	coding (225/732 nt)	PP_5304	putative Lipoprotein
	?	AE015451	6052033 =	34 (0.890)					coding (326/732 nt)	PP_5304	putative Lipoprotein

ACTGCGGCGGTCAAAGCCGGCAGCCTGCGCCAGGCGCTGAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCCGGACC  >  AE015451/6051813‑6052230                                                                                                                                                                                                                             |                                                                                                                                                                                                      cttccagttaccacccaggtaggcctggtaaagcgctttctcgaagctgctgcccagtggtgcattggctgcagcctgcgccttggcgcgcacgaaggtttgcttggtgccgttctggtcgacggccagcagctcgtcgccatcgagcgaaagctgctcggtctggccgccttggaaacgggcctgccattgcttttcattggcgctcagctggccgtcgACCAGAACGGCACCa                                                                                                                                                                                         <  1:339191‑M2/15‑1 (MQ=255)                     cAGCCTGCGCCAGGCGCTGAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGTAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTgcgcg                                                                                                                                                                       <  2:269294/233‑1 (MQ=255)                                    gcTGAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGc                                                                                                                                                       <  1:59887/234‑1 (MQ=255)                                     cTGAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGc                                                                                                                                                       <  2:683112/233‑1 (MQ=255)                                      tGAATGAGCACGGCCCAGGGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGc                                                                                                                                                       <  1:707633/232‑1 (MQ=255)                                       gAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCa                                                                                                                                                  <  1:544017/236‑1 (MQ=255)                                                      aGTATTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTGTCGCGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCa                                                                                                                                                                                         <  1:317034/182‑1 (MQ=255)                                                                tGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGa                                                                                                                                                                                                  >  1:201148/1‑163 (MQ=255)                                                                tGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTc                                                                                                                           >  2:253326/1‑234 (MQ=255)                                                                tGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCg                                                                                                                          >  1:288274/1‑235 (MQ=255)                                                                             tGGCCAATCAGCAAGCTAGCTATAGCAATGGTTGCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTAc                                                                                                            <  1:229901/236‑1 (MQ=255)                                                                                    tCAGCAAGCTAGCTATAGCAATGGTCTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCt                                                                                                     <  1:192531/236‑1 (MQ=255)                                                                                       gCAAGCGAGCTATAGCAATGGGTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTggg                                                                                                                                     <  2:189626/201‑1 (MQ=255)                                                                                                         tggtgccgttctggtCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAg                                                                                 <  1:339191‑M1/220‑1 (MQ=255)                                                                                                              tCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGgc                                                                                                                                    <  2:88588/179‑1 (MQ=255)                                                                                                               cGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATg                                                                                                                                               <  2:225038/167‑1 (MQ=255)                                                                                                                  ggCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAg                                                                                                                    >  2:344003/1‑191 (MQ=255)                                                                                                                   gccgccGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCga                                                                                                                         <  2:156631/185‑1 (MQ=255)                                                                                                                   gccgccGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTAc                                                                                                            <  1:151041/198‑1 (MQ=255)                                                                                                                         GACGGCCAGATGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGCCCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGggt                                                                                             >  1:142162‑M1/1‑207 (MQ=255)                                                                                                                              CCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGCCGACCAGAACGccacca                                                                                                                                                                                         <  2:6258‑M1/110‑1 (MQ=255)                                                                                                                                           aaTGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTg                                                <  2:269387/234‑1 (MQ=255)                                                                                                                                             catcgagcgaaagctgctcggtctggccgccttggaaacgggcctgccattgcttttcattggcgctcagctggccgtcgACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCcaa                                                                  <  2:587443‑M2/134‑1 (MQ=255)                                                                                                                                                agaGCAATCGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGcac                                                                                                                                            <  2:121809/135‑1 (MQ=255)                                                                                                                                                      aTGGCAGGCCCGGTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCt                                                                                                                                                         <  2:17376/118‑1 (MQ=255)                                                                                                                                                         gCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCcaag                                                                 >  2:282988/1‑203 (MQ=255)                                                                                                                                                          cAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGgcg                                                        >  2:325950/1‑211 (MQ=255)                                                                                                                                                               ccGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAAc                           >  1:428795/1‑235 (MQ=255)                                                                                                                                                                 gtctgcccgccttggaagcgggcctgccattgcttttcattggcgctcagctggccgtcgACCAGAACGGCACCAAGCAAACCTTc                                                                                                                                                                              <  1:315975‑M2/26‑1 (MQ=255)                                                                                                                                                                 gTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTgg                                                                                               <  2:117615/165‑1 (MQ=255)                                                                                                                                                                 gTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTgg                                                                                               >  1:117615/1‑165 (MQ=255)                                                                                                                                                                      cAAGGCGGCCAGACCGAGCAGCTGTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAGCCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGAtcg                                                                             <  2:168232/178‑1 (MQ=255)                                                                                                                                                                              ccAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCttt                                                                                                              <  2:654301/137‑1 (MQ=255)                                                                                                                                                                               cAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCggg          >  1:666945/1‑236 (MQ=255)                                                                                                                                                                                 gACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGc        >  1:210517/1‑236 (MQ=255)                                                                                                                                                                                        cagcTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCCGGAcc  <  1:369866/235‑1 (MQ=255)                                                                                                                                                                                           cTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCg                                <  2:578161/202‑1 (MQ=255)                                                                                                                                                                                                    gATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGcc       <  1:2075/218‑1 (MQ=255)                                                                                                                                                                                                        gcggcgAGCTGCTGGGCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTAcc                                                                                                           <  2:587223/114‑1 (MQ=255)                                                                                                                                                                                                        gCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGCCACCGGCAACGTCACCGGCCTACCGGGGCCGGa    >  1:245715/1‑217 (MQ=255)                                                                                                                                                                                                                ctgctgGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGcc                 <  1:136765/196‑1 (MQ=255)                                                                                                                                                                                                                            gACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGcc       <  2:262275‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                      ACTGCGGCGGTCAAAGCCGGCAGCCTGCGCCAGGCGCTGAATGAGCACGGCCCAGTGTTCGAGTGGAAGCTCGACGTGGCCAATCAGCAAGCTAGCTATAGCAATGGTTTCGAGGCCGCCGACGGCCAGCTGAGCGCCAATGAAAAGCAATGGCAGGCCCGTTTCCAAGGCGGCCAGACCGAGCAGCTTTCGCTCGATGGCGACGAGCTGCTGGCCGTCGACCAGAACGGCACCAAGCAAACCTTCGTGCGCGCCAAGGCGCAGGCTGCAGCCAATGCACCACTGGGCAGCAGCTTCGAGAAAGCGCTTTACCAGGCCTACCTGGGTGGTAACTGGAAGATCGTCGAAGGCCAAGGCAAGGGCGCCAGCGTGCGCTTCAGCGACACCGGCAACGTCACCGGCCTACCGGGGCCGGACC  >  AE015451/6051813‑6052230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.