New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1190971 =	32 (0.780)	4 (0.100)	4/316	NT	11.7%	coding (493/966 nt)	xcpX	Type II secretion system protein K
	?	AE015451	1191043 =	30 (0.780)					coding (565/966 nt)	xcpX	Type II secretion system protein K

CAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCC  >  AE015451/1190749‑1191194                                                                                                                                                                                                                               |                                                                                                                                                                                                                                cAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGGCAGCAACCGCCACGGCTGGCGGCTGAcc                                                                                                                                                                                                                     >  1:147386/1‑235 (MQ=255)  aGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTAGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGAGCCGAGAACGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGAc                                                                                                                                                                                                                      >  2:403599/1‑233 (MQ=255)    gaacgtttcgtcatccaccgccccaagcgcctgacgcagtgcagccgcgtccacaaaccccgacgccggcctgccgctgacaatgcgactgagcaacgaacgcgagtaacgcccttcatacagcgcctccagcaggggcagatgctccaaccccagcgcattggcgttgagccgccaacccgtggtctggggcaaggcgcacagcatcgggtaacgcgcCt                                                                                                                                                                                                                                <  2:613231‑M1/2‑1 (MQ=255)                                            tCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGcc                                                                                                                                                                          >  2:566435/1‑235 (MQ=255)                                                 gCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCCCGGCTGGCGGCGGACCAGCCGa                                                                                                                                                                                                               >  1:229353/1‑193 (MQ=255)                                                            cgcCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAgccgc                                                                                                                                                             <  2:428923/232‑1 (MQ=255)                                                            cgcCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAgccgc                                                                                                                                                             >  1:428924/1‑232 (MQ=255)                                                               cGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGAc                                                                                                                                                                      >  2:475637/1‑220 (MQ=255)                                                                                                              aCATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCt                                                                                                        <  1:3292/235‑1 (MQ=255)                                                                                                               cATGGCGGCCGAACGCCTGGTCGATGCCCTTGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAgccgcc                                                                                                                                                            >  1:77689/1‑182 (MQ=255)                                                                                                               cATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCCCGGGTTggcg                                                                                                           >  1:213560/1‑231 (MQ=255)                                                                                                                aTGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGcccc                                                                                                                           >  1:756676/1‑214 (MQ=255)                                                                                                                    cggcCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGGTGCt                                                                                                                                         >  2:587611/1‑196 (MQ=255)                                                                                                                                 cctccagcaggggcagatgctccaaccccagcgcattggcgttgagccgccaacccgtggtctggggcaaggcgcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCggacgccagccgtggcggct                                                                                                                                                      <  1:226906‑M1/76‑9 (MQ=255)                                                                                                                                       tGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCATGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCGCGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAg                                                                               <  1:403600/235‑1 (MQ=255)                                                                                                                                            tGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGt                                                                                                                                                                                    <  2:616744/129‑1 (MQ=255)                                                                                                                                                cGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGGTGGCGGCt                                                                                                        >  1:178958/1‑201 (MQ=255)                                                                                                                                                    tGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGCGAGCGCCCAGTACCTGCGTCAGCAACCGCCCCGGCTGGCGGCTGACCAGcccg                                                                                                                                                                                                               >  2:24056/1‑92 (MQ=255)                                                                                                                                                      gCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCGGCGTCAGCAACCGCCACGGCTGGCGGCAGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACg                                                                                                   <  2:251597/200‑1 (MQ=255)                                                                                                                                                       cTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGa                                                              <  1:566436/236‑1 (MQ=255)                                                                                                                                                              ccGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATg                                                                                             <  1:759366/198‑1 (MQ=255)                                                                                                                                                              ccGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATg                                                                                             >  2:759365/1‑198 (MQ=255)                                                                                                                                                                               cTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCt                                                                                                                                         <  2:3321/137‑1 (MQ=255)                                                                                                                                                                                            agagCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCAt                                                                            <  2:370074/185‑1 (MQ=255)                                                                                                                                                                                            agagCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCAt                                                                            >  1:370075/1‑185 (MQ=255)                                                                                                                                                                                               gcgcCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCGGGGGTTGGAGc                                                                              >  2:544819/1‑180 (MQ=255)                                                                                                                                                                                                         cgcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCg                                                                                                                                              <  2:481900‑M1/84‑1 (MQ=255)                                                                                                                                                                                                          gcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                            >  1:555217‑M1/22‑187 (MQ=255)                                                                                                                                                                                                          gcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                            <  2:555216‑M1/166‑1 (MQ=255)                                                                                                                                                                                                                cAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCt                          >  1:204790/1‑215 (MQ=255)                                                                                                                                                                                                                 aGCACCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTg                                                                                                                                                                                           <  2:78221/53‑1 (MQ=255)                                                                                                                                                                                                                    aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTg                                                                         >  2:501493/1‑164 (MQ=255)                                                                                                                                                                                                                    aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTg                                                                         <  1:501494/164‑1 (MQ=255)                                                                                                                                                                                                                    aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGcc  >  1:319651/1‑235 (MQ=255)                                                                                                                                                                                                                    aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTCTCTAGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTCGccc                                                                                                                            >  2:366460/1‑113 (MQ=255)                                                                                                                                                                                                                     cccGCCACGGCTGGCGGCTGCCCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAgccgc                                                                                                                                                             <  1:219561/78‑1 (MQ=255)                                                                                                                                                                                                                      ccGCCACGGCGGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTgc                                                                                                                                     <  2:72643/102‑1 (MQ=255)                                                                                                                                                                                                                             ggCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGtt                                                                                   <  2:71372/145‑1 (MQ=255)                                                                                                                                                                                                                             gcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCCGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTgg                                                                                                             <  2:10155‑M1/117‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                CAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCAATGACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCC  >  AE015451/1190749‑1191194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.