New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1190971 =	32 (0.780)	4 (0.100)	4/316	NT	11.7%	coding (493/966 nt)	xcpX	Type II secretion system protein K
	?	AE015451	1191043 =	30 (0.780)					coding (565/966 nt)	xcpX	Type II secretion system protein K

ACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTTGTGGACGCGGCTGCACTGCGTCAGGCGCTTGGGGCGGTGGATGACGAAACGTTC  >  AE015451/1190858‑1191261                                                                                                                                                                                          |                                                                                                                                                                                                                           aCATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCt                                                                                                                                                                           <  1:3292/235‑1 (MQ=255)  cATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCCCGGGTTggcg                                                                                                                                                                              >  1:213560/1‑231 (MQ=255)   aTGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGcccc                                                                                                                                                                                              >  1:756676/1‑214 (MQ=255)       cggcCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGGTGCt                                                                                                                                                                                                            >  2:587611/1‑196 (MQ=255)                    cctccagcaggggcagatgctccaaccccagcgcattggcgttgagccgccaacccgtggtctggggcaaggcgcacagcatcgggtaacgcgcctggcggctggcgtccggctccagcaacaggttcagctcgctggtgtcgagcatcggctggtcagccgccagGCGCGTTACCCGATGCTGTgc                                                                                                                                                                                                        <  2:555216‑M2/21‑1 (MQ=255)                    cctccagcaggggcagatgctccaaccccagcgcattggcgttgagccgccaacccgtggtctggggcaaggcgcacagcatcgggtaacgcgcctggcggctggcgtccggctccagcaacaggttcagctcgctggtgtcgagcatcggctggtcagccgccagGCGCGTTACCCGATGCTGTgc                                                                                                                                                                                                        >  1:555217‑M2/167‑187 (MQ=255)                          tGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCATGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCGCGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAg                                                                                                                                                  <  1:403600/235‑1 (MQ=255)                                   cGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGGTGGCGGCt                                                                                                                                                                           >  1:178958/1‑201 (MQ=255)                                         gCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCGGCGTCAGCAACCGCCACGGCTGGCGGCAGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACg                                                                                                                                                                      <  2:251597/200‑1 (MQ=255)                                          cTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGa                                                                                                                                 <  1:566436/236‑1 (MQ=255)                                                 ccGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATg                                                                                                                                                                >  2:759365/1‑198 (MQ=255)                                                 ccGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATg                                                                                                                                                                <  1:759366/198‑1 (MQ=255)                                                                  cTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCt                                                                                                                                                                                                            <  2:3321/137‑1 (MQ=255)                                                                     ccaacccgtggtctggggcaaggcgcacagcatcgggtaacgcgccgggcggctggcgtccggctccagcaacaggttcagctcgctggtgtcgagcatcggctggtcagccgccaggc                                                                                                                                                                                                                           <  2:10155‑M2/2‑1 (MQ=255)                                                                               agagCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCAt                                                                                                                                               >  1:370075/1‑185 (MQ=255)                                                                               agagCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCAt                                                                                                                                               <  2:370074/185‑1 (MQ=255)                                                                                  gcgcCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCGGGGGTTGGAGc                                                                                                                                                 >  2:544819/1‑180 (MQ=255)                                                                                            cgcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCg                                                                                                                                                                                                                 <  2:481900‑M1/84‑1 (MQ=255)                                                                                             gcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                                                                                               <  2:555216‑M1/166‑1 (MQ=255)                                                                                             gcacagcatcgggtaacgcgcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                                                                                               >  1:555217‑M1/22‑187 (MQ=255)                                                                                                   cAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCt                                                                                             >  1:204790/1‑215 (MQ=255)                                                                                                      cgggtaacgcgcctggcggctggcgtccggctccagcaacaggttcagctcgctggtgtcgagcatcggctggtcagccgccagGCGCGTTACCCGATGCTGTgcg                                                                                                                                                                                                       <  2:481900‑M2/22‑1 (MQ=255)                                                                                                       aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTg                                                                                                                                            >  2:501493/1‑164 (MQ=255)                                                                                                       aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTg                                                                                                                                            <  1:501494/164‑1 (MQ=255)                                                                                                       aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGcc                                                                     >  1:319651/1‑235 (MQ=255)                                                                                                       aaCCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTCTCTAGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTCGccc                                                                                                                                                                                               >  2:366460/1‑113 (MQ=255)                                                                                                         ccGCCACGGCGGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTgc                                                                                                                                                                                                        <  2:72643/102‑1 (MQ=255)                                                                                                              agccgccacggctggcgtccggctccagcaacaggttcagctcgctggtgtcgagcatcggctggtcagccgccagGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                                                                                               <  1:226906‑M2/94‑1 (MQ=255)                                                                                                                ggCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGtt                                                                                                                                                      <  2:71372/145‑1 (MQ=255)                                                                                                                gcCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCCGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTgg                                                                                                                                                                                <  2:10155‑M1/117‑1 (MQ=255)                                                                                                                          TGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACt                                                                                                          >  2:204789‑M1/1‑179 (MQ=255)                                                                                                                               aGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCa                                                                                           >  2:484779/1‑189 (MQ=255)                                                                                                                                 ccGATGCGCGACGCCAGCGAGCTGAAGCTGTGGCGGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACg                                                                                                                                                                      <  2:178448/112‑1 (MQ=255)                                                                                                                                  cGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTtgt                                                      >  1:273734/1‑223 (MQ=255)                                                                                                                                  cGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTtgt                                                      <  2:273733/223‑1 (MQ=255)                                                                                                                                            cacCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGcgttcgtt                                                                                                <  2:303058/171‑1 (MQ=255)                                                                                                                                                aGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTtgt                                                      <  1:484780/209‑1 (MQ=255)                                                                                                                                                                 gCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTTGTGGACGCGGCTGCACTGCGTCAGGCGCTTGGGGCGGTAGATGAc           >  1:493953/1‑235 (MQ=255)                                                                                                                                                                        ccGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAgg                                                                                                                               <  2:343726/112‑1 (MQ=255)                                                                                                                                                                         cGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTtgt                                                      <  2:229352/184‑1 (MQ=255)                                                                                                                                                                                        agGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTTGTGGACGCGGCTGCACTGCGTCAGGCGCTTGGGGCGGTGGATGACGAAACGTTc  <  2:613231‑M2/219‑1 (MQ=255)                                                                                                                                                                                          |                                                                                                                                                                                                                           ACATGGCGGCCGAACGCCTGGTCGATGCCCTGGCCGACTGGCTTGATGCCGACAGTGATGCCCGCCTGCAGGGCGCCGAGAGCGCCCAGTACCTGCGTCAGCAACCGCCACGGCTGGCGGCTGACCAGCCGATGCTCGACACCAGCGAGCTGAACCTGTTGCTGGAGCCGGACGCCAGCCGCCAGGCGCGTTACCCGATGCTGTGCGCCTTGCCCCAGACCACGGGTTGGCGGCTCAACGCCAATGCGCTGGGGTTGGAGCATCTGCCCCTGCTGGAGGCGCTGTATGAAGGGCGTTACTCGCGTTCGTTGCTCAGTCGCATTGTCAGCGGCAGGCCGGCGTCGGGGTTTGTGGACGCGGCTGCACTGCGTCAGGCGCTTGGGGCGGTGGATGACGAAACGTTC  >  AE015451/1190858‑1191261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.