New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2033404 =	13 (0.320)	6 (0.150)	6/328	NT	32.1%	coding (885/1665 nt)	pgi‑I	glucose‑6‑phosphate isomerase
	?	AE015451	2033445 =	NA (NA)					coding (926/1665 nt)	pgi‑I	glucose‑6‑phosphate isomerase

ACGCCATGGCCGCGCGGACCTGGTACCTGGCCCAAGGCGGCTCGGAAGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGAATCCAACGGCAAGA  >  AE015451/2033184‑2033609                                                                                                                                                                                                                             |                                                                                                                                                                                                                ccccagatcaccggcccggtgtcggtcttcaccggggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGt                                                                                                                                                                                                  >  1:74705‑M1/221‑236 (MQ=255)            cggcccggtgtcggtcttcaccggggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGaa                                                                                                                                                                                                              >  2:374896‑M1/210‑213 (MQ=255)                        ggtcttcaccggggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGaa                                                                                                                                                                                                              >  2:214589‑M1/198‑201 (MQ=255)                                 cggggtaccgtcttgcagcacgctcttgccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGaa                                                                                                                                                                                                              >  1:177077‑M1/189‑192 (MQ=255)                                       ggcTCGGAAGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGt                                                                                                                                                                                                  >  2:409926/1‑198 (MQ=34)                                                      cTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGAc                                                                                                                                                                                   <  1:409927/198‑1 (MQ=35)                                                            gccgttggattccatgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGt                                                                                                                                                                                                       >  1:288758‑M1/162‑172 (MQ=255)                                                                                              ctgctgTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCa                                                                                                                                                                                 >  2:613297/1‑160 (MQ=35)                                                                                                                                              gttgcgtcccagaagttgccataccacgcgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGCGCCTACCCCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTg                                                                                                                                         >  2:145807‑M1/80‑152 (MQ=255)                                                                                                                                                     gggtgggCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTgcgcctgtct                                             >  1:460004/1‑229 (MQ=17)                                                                                                                                                           gcgcTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACg                                                                 <  2:460003/209‑1 (MQ=31)                                                                                                                                                               tACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCAc                                    >  1:522445/1‑234 (MQ=31)                                                                                                                                                                               agcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGTGCCTACACCATGGAc                                                                                                                                                                                   <  2:645194‑M1/31‑1 (MQ=255)                                                                                                                                                                               agcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGTGCCTACACCATGGAc                                                                                                                                                                                   >  1:645195‑M1/47‑77 (MQ=255)                                                                                                                                                                                 aTCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGGGTATGGCAACTTCTGGGACGCAAACAGCCAcgc                                                                               >  2:607044/1‑175 (MQ=9)                                                                                                                                                                                   cGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACacg                                                                                                                                                     >  2:17944/1‑101 (MQ=17)                                                                                                                                                                                                     ggCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGAATCCAACGGCAaga  >  1:438641/1‑230 (MQ=31)                                                                                                                                                                                                        tcttgtcgaacggagcggtctGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGGCAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTg                                                      <  1:243370‑M1/154‑1 (MQ=255)                                                                                                                                                                                                                   ccAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCgtgt                                                                                                                   >  2:621481/1‑105 (MQ=33)                                                                                                                                                                                                                   ccAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCgtgt                                                                                                                   <  1:621482/105‑1 (MQ=32)                                                                                                                                                                                                                      aCTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTg                                                                                                                                         >  1:755238/1‑80 (MQ=34)                                                                                                                                                                                                                      aCTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTg                                                                                                                                         <  2:755237/80‑1 (MQ=34)                                                                                                                                                                                                                             |                                                                                                                                                                                                                ACGCCATGGCCGCGCGGACCTGGTACCTGGCCCAAGGCGGCTCGGAAGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCGATGTGGGACTGGGTGGGTGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGT‑‑GGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCACTACCTGCGCAACATCACCAAGCACCTGCAGCAGCTGGACATGGAATCCAACGGCAAGA  >  AE015451/2033184‑2033609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.