New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3868842 =	28 (0.690)	5 (0.130)	5/320	NT	17.6%	coding (1108/1353 nt)	gntT	D‑gluconate transporter
	?	AE015451	3868874 =	20 (0.510)					coding (1140/1353 nt)	gntT	D‑gluconate transporter

CGCGGCTTCAACCGCCAGCAGATCATGAAGATGCTCGACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGC  >  AE015451/3868608‑3869051                                                                                                                                                                                                                                           |                                                                                                                                                                                                                  cgcgGCTTCAACCGCCAGCAGATCATGAAGATGCTCGACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCCCCACCAt                                                                                                                                                                                                                  >  1:375686/1‑236 (MQ=255)       ttCAACCGCCAGCAGATCATGAAGATGCTCGACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCg                                                                                                                                                                                                             <  1:491205/235‑1 (MQ=255)               caacggtcacaccaccagcgacagcaacatgatgaaaatgatgccgacgatggacaggatcgtctccatcatgctccaggtcttgaaggtttctgccacggtcatgttgaagtactgcttcaccagccagaaaccggcatcgttcacatgcgacaggatcagcgagccggcaccggtggccagtaccaacagctcacggttcacccccggcacgagggcgATCACCGGCGCggg                                                                                                                                                                                                      <  1:110822‑M1/14‑1 (MQ=255)                      aTCATGAAGATGCTCGACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTgg                                                                                                                                                                                              <  1:691446/235‑1 (MQ=255)                                     gACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGAc                                                                                                                                                                                >  2:452077/1‑234 (MQ=255)                                     gACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCt                                                                                                                                                                              >  1:298791/1‑236 (MQ=255)                                                  cACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCg                                                                                                                                                                                         >  1:187999/1‑212 (MQ=255)                                                    ccGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGAt                                                                                                                                                                                    >  1:541099/1‑215 (MQ=255)                                                          gccgccATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAAc                                                                                                                                                              <  1:308435/231‑1 (MQ=255)                                                          gccgccATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAAc                                                                                                                                                              >  2:308434/1‑231 (MQ=255)                                                               catggacaggatcggctccatcatgctccaggtcttgaaggtttctgccccggtcatgttgaagtactgcttcaccagccagaaaccggcatcgttcacatgcgacaggatcagcgagccggcaccggtggccagtaccaacagctcacggttcacccccggcacgaggtcgATCACCGGCGCggg                                                                                                                                                                                                      >  2:110822‑M1/173‑186 (MQ=255)                                                                                       cGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCg                                                                                                                                                            <  2:381691/204‑1 (MQ=255)                                                                                         gTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGCGAACCGTGAGCTGTTGGTACTGGCCACCgg                                                                                                                                    >  1:637342/1‑226 (MQ=255)                                                                                                 aaGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCg                                                                                                                                                                                                 <  2:568566/157‑1 (MQ=255)                                                                                                    cAAGTGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGa                                                                                                                                                                                 <  1:305248/170‑1 (MQ=255)                                                                                                     aggtttctgccacggtcatgttgaagtactgcttcaccagccagaaaccggcatcgttcacatgcgacaggatcagcgagccggcaccggtggccagtaccaacagctcacggttcacccccggcacgaggtcgAt                                                                                                                                                                                                                  >  1:665017‑M1/135‑136 (MQ=255)                                                                                                          cgggtggATACCGCGGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCgg                                                                                                                                    <  2:375685/207‑1 (MQ=255)                                                                                                                         gTAGGCAACGTGATCGTGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATcc                                                                                                                   <  1:48317/211‑1 (MQ=255)                                                                                                                           aGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGgcgc                                                                                                                                                                                                         <  1:245504/123‑1 (MQ=255)                                                                                                                                        gggCAGATGGCTGTCCAGGCAGAAATTTCGCCGCTCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCg                                                                                                                                                                                                 <  1:83718/118‑1 (MQ=255)                                                                                                                                         ggCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAg                                                                          <  1:452078/236‑1 (MQ=255)                                                                                                                                          gCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCCCGACCGGCTCCGCCCCGGTCGCCACCAt                                                                                                                                                                                                                  >  2:14516/1‑99 (MQ=255)                                                                                                                                                                aTTTCTCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCTGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGACGGTTTctggc                                                                                     <  2:703268/202‑1 (MQ=255)                                                                                                                                                                 tttCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAg                                                                          <  1:370986/212‑1 (MQ=255)                                                                                                                                                                  ttCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTg                                                                                                                                            <  2:187998/145‑1 (MQ=255)                                                                                                                                                                  tgcGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCAGCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCa                                                     <  1:155887/230‑1 (MQ=255)                                                                                                                                                                     gCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATcc                                                                                                                   <  1:98700/167‑1 (MQ=255)                                                                                                                                                                       cGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGGATCGTGGCACCGGTGATCGAc                                                                                                                                                                                >  2:115297/1‑104 (MQ=255)                                                                                                                                                                            aTGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAAccggcatc                                         <  2:387823/234‑7 (MQ=255)                                                                                                                                                                                          ggtggCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGc                                                                                                                                 <  1:159961/132‑1 (MQ=255)                                                                                                                                                                                                              gctcacggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGGCCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCt                                                                                                                            >  1:627577‑M1/30‑117 (MQ=255)                                                                                                                                                                                                              gctcacggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCt                                                                                                                            <  2:627576‑M1/88‑1 (MQ=255)                                                                                                                                                                                                                  gACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCAtcgtcg    <  2:298790/233‑1 (MQ=255)                                                                                                                                                                                                                  gACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGc  >  1:589428/1‑235 (MQ=255)                                                                                                                                                                                                                   cggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGaa                                                                                                      <  2:560411‑M1/110‑1 (MQ=255)                                                                                                                                                                                                                             ccACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGa                                                                               <  2:541098/147‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                  CGCGGCTTCAACCGCCAGCAGATCATGAAGATGCTCGACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGC  >  AE015451/3868608‑3869051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.