New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3868842 =	28 (0.690)	5 (0.130)	5/320	NT	17.6%	coding (1108/1353 nt)	gntT	D‑gluconate transporter
	?	AE015451	3868874 =	20 (0.510)					coding (1140/1353 nt)	gntT	D‑gluconate transporter

GACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGACCGTTG  >  AE015451/3868644‑3869093                                                                                                                                                                                                                                       |                                                                                                                                                                                                                            gACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGAc                                                                                                                                                                                                                          >  2:452077/1‑234 (MQ=255) gACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCt                                                                                                                                                                                                                        >  1:298791/1‑236 (MQ=255)                      gccgccATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAAc                                                                                                                                                                                                        <  1:308435/231‑1 (MQ=255)                      gccgccATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAAc                                                                                                                                                                                                        >  2:308434/1‑231 (MQ=255)                                                   cGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCg                                                                                                                                                                                                      <  2:381691/204‑1 (MQ=255)                                                     gTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGCGAACCGTGAGCTGTTGGTACTGGCCACCgg                                                                                                                                                                              >  1:637342/1‑226 (MQ=255)                                                                cAAGTGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGa                                                                                                                                                                                                                           <  1:305248/170‑1 (MQ=255)                                                                      cgggtggATACCGCGGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCgg                                                                                                                                                                              <  2:375685/207‑1 (MQ=255)                                                                                     gTAGGCAACGTGATCGTGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATcc                                                                                                                                                             <  1:48317/211‑1 (MQ=255)                                                                                                     ggCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAg                                                                                                                    <  1:452078/236‑1 (MQ=255)                                                                                                                         ttcacatgcgacaggatcagcgagccggcaccggtggccagtaccaacagctcacggttcacccccggcacgaggtcgatcaccggtgccacgatacccgcgccggtgatCGACCTCGTGCCGGGGGTGAACCg                                                                                                                                                                                                      <  2:560411‑M2/24‑1 (MQ=255)                                                                                                                            aTTTCTCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCTGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGACGGTTTctggc                                                                                                                               <  2:703268/202‑1 (MQ=255)                                                                                                                             tttCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAg                                                                                                                    <  1:370986/212‑1 (MQ=255)                                                                                                                              ttCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTg                                                                                                                                                                                      <  2:187998/145‑1 (MQ=255)                                                                                                                              tgcGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCAGCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCa                                                                                               <  1:155887/230‑1 (MQ=255)                                                                                                                                 gCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATcc                                                                                                                                                             <  1:98700/167‑1 (MQ=255)                                                                                                                                   cGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGGATCGTGGCACCGGTGATCGAc                                                                                                                                                                                                                          >  2:115297/1‑104 (MQ=255)                                                                                                                                        aTGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAAccggcatc                                                                                   <  2:387823/234‑7 (MQ=255)                                                                                                                                               agccggcaccggtggccagtaccaacagctcacggttcacccccggcacgaggtcgatcaccggtgccacgatacccgcgccggtgatCGACCTCGTGCCGGGGGTGAACCGTGAGc                                                                                                                                                                                                 <  2:627576‑M2/29‑1 (MQ=255)                                                                                                                                               agccggcaccggtggccagtaccaacagctcacggttcacccccggcacgaggccgatcaccggtgccacgatacccgcgccggtgatCGACCTCGTGCCGGGGGTGAACCGTGAGc                                                                                                                                                                                                 >  1:627577‑M2/89‑117 (MQ=255)                                                                                                                                                      ggtggCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGc                                                                                                                                                                           <  1:159961/132‑1 (MQ=255)                                                                                                                                                                          gctcacggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGGCCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCt                                                                                                                                                                      >  1:627577‑M1/30‑117 (MQ=255)                                                                                                                                                                          gctcacggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCt                                                                                                                                                                      <  2:627576‑M1/88‑1 (MQ=255)                                                                                                                                                                              gACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCAtcgtcg                                              <  2:298790/233‑1 (MQ=255)                                                                                                                                                                              gACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGc                                            >  1:589428/1‑235 (MQ=255)                                                                                                                                                                               cggttcacccccggcacgaggtcgATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGaa                                                                                                                                                <  2:560411‑M1/110‑1 (MQ=255)                                                                                                                                                                                         ccACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGa                                                                                                                         <  2:541098/147‑1 (MQ=255)                                                                                                                                                                                                        TCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTgg                                                                             >  2:225260‑M1/1‑176 (MQ=255)                                                                                                                                                                                                            CGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTa                                                                                                                  <  2:704846‑M1/135‑1 (MQ=255)                                                                                                                                                                                                                     tATCGTGGCACCGGTGATCGACACCGGGCCGGGGGTGAACCGTGAGCTGTTGGTCCTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGGTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATgg                                                                   <  2:162853/173‑1 (MQ=255)                                                                                                                                                                                                                      aTCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGACCGtt   <  1:485539/236‑1 (MQ=255)                                                                                                                                                                                                                         cccgcgccggtgatCGCCCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGACCGTTg  <  1:110822‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                         cccgcgccggtgatCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGGGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGCCGATCCTGTCCatg                                                  >  2:110822‑M2/15‑185 (MQ=255)                                                                                                                                                                                                                              aCCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGa        >  2:529806/1‑223 (MQ=255)                                                                                                                                                                                                                              aCCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGa        <  1:529807/223‑1 (MQ=255)                                                                                                                                                                                                                                     atCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCt                                                                                        >  1:665017‑M2/3‑136 (MQ=255)                                                                                                                                                                                                                                       cGACCTCGTGCCGGGGTTGAACCGTGCGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGTGACGATCCTGTCCAtcgtc                                               <  2:425013/175‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                            GACCAGAGCCTGGCACCGACTGCCGCCATCGTGCTGATCGTCGGCGCTGGCGGTGGCTTCAAGCAAATGCTGGTGGATACCGGCGTAGGCAACGTGATCGGGCAGATGGCTGTCCAGGCAGAAATTTCGCCGATCATGCTGGCATGGCTGGTGGCGGCGGTGATCCGCATCGCGACCGGCTCCGCCACGGTCGCCACCATCACCGGCGCGGGTATCGTGGCACCGGTGATCGACCTCGTGCCGGGGGTGAACCGTGAGCTGTTGGTACTGGCCACCGGTGCCGGCTCGCTGATCCTGTCGCATGTGAACGATGCCGGTTTCTGGCTGGTGAAGCAGTACTTCAACATGACCGTGGCAGAAACCTTCAAGACCTGGAGCATGATGGAGACGATCCTGTCCATCGTCGGCATCATTTTCATCATGTTGCTGTCGCTGGTGGTGTGACCGTTG  >  AE015451/3868644‑3869093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.