New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4053468 =	33 (0.810)	3 (0.080)	3/320	NT	8.5%	coding (42/1320 nt)	PP_3573	putative Monooxygenase
	?	AE015451	4053485 =	33 (0.850)					coding (59/1320 nt)	PP_3573	putative Monooxygenase

CCGGCCAACCTGCCCCACAGGCCAGAAAACTCAAGGCCTTCGCCGTTTTATCGGCAAGTACCAGCTAAATACTATTTTCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTCGAGCAGTACGT  >  AE015451/4053259‑4053695                                                                                                                                                                                                                  |                                                                                                                                                                                                                                    ccGGCCACCCTGCCCCACAGGCCAGAACACTCAAGGCCTTCGCCGTTTTATCGGCAAGTACCAGCTAAATACTATTTTCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCg                                                                                                                                                                                                                        <  1:127048/223‑1 (MQ=255)                               tCAAGGCCTTCGCCGTTTTATCGGCAAGTACCAGCTAAATACTATTTTCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGcc                                                                                                                                                                                <  2:543566/233‑1 (MQ=255)                                                                        cTATTTTCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTa                                                                                                                                    >  1:298111/1‑236 (MQ=255)                                                                              tCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGc                                                                                                                                                       >  2:753490/1‑211 (MQ=255)                                                                                      tCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCg                                                                                                                                                                                    >  2:616499/1‑174 (MQ=255)                                                                                      tCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCg                                                                                                                                                                                    <  1:616500/174‑1 (MQ=255)                                                                                          cGGCATCCATAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACATCCTCGAAATCGACACCCTCGTCGTCGGCGcc                                                                                                                                                                                                                                  <  2:300732/124‑1 (MQ=255)                                                                                                 ccTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCg                                                                                                                                                                                                         >  2:593638/1‑142 (MQ=255)                                                                                                   tAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGcc                                                                                                          >  1:348425/1‑235 (MQ=255)                                                                                                        tGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAAc                                                                                                       <  2:298110/233‑1 (MQ=255)                                                                                                         ggCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGc                                                                                                                                                                                                                 <  2:62871/126‑1 (MQ=255)                                                                                                             ccAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGatg                                                                                                                                                                                                          >  1:166378/1‑127 (MQ=255)                                                                                                             ccAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGCGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAAcggcccggc                                                                                               >  1:647939/1‑236 (MQ=255)                                                                                                             ccAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCCACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCaa                                                                                                        >  1:112742/1‑227 (MQ=255)                                                                                                                   aaCGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATcg                                                                                                                                                   >  2:650877/1‑178 (MQ=255)                                                                                                                   aaCGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCa                                                                                         >  1:374930/1‑236 (MQ=255)                                                                                                                   aaCGGCGGTCCTCCAAACCGACCTGACAAAAACCCCCTGAACAAGGGCTCGGACATGACACTTAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGCGGCCATGAGCGCACACCCTAGCAAg                                                                                                                                                                                           >  2:203738/1‑138 (MQ=255)                                                                                                                                  aaCCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGa                                                                                      >  1:653597/1‑224 (MQ=255)                                                                                                                                       aCCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCg                                                                                                                                                                                                                        <  1:654449/89‑1 (MQ=255)                                                                                                                                          tGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTAcccg                                                                                                                                >  1:240657/1‑172 (MQ=255)                                                                                                                                          tGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGa                                                                                                                       >  1:148622/1‑183 (MQ=255)                                                                                                                                               aaaaCCGCCTGAGCAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACCCCCTCGTCGGCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATcgcg                                                                                                                                                 <  2:195178/152‑1 (MQ=255)                                                                                                                                                         gAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGcc                                                    >  1:483121/1‑235 (MQ=255)                                                                                                                                                          aaCAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACg                                                      <  1:667821/232‑1 (MQ=255)                                                                                                                                                                       aCATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGGGCCGCACCTGGGACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGcc                                                                                                                              >  2:149457/1‑147 (MQ=255)                                                                                                                                                                       aCATGACACTGAACAACCGCGAAATCGCCACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCt                                                                                 <  2:371800/192‑1 (MQ=255)                                                                                                                                                                                  gccaagcttgctcaggtgttcgctcatggccaCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATc                                                                                                                                                    >  1:516229‑M1/33‑114 (MQ=255)                                                                                                                                                                                  gccaagcttgctcaggtgttcgctcatggccaCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACAACTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATc                                                                                                                                                    <  2:516228‑M1/82‑1 (MQ=255)                                                                                                                                                                                    caacCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCACCCTCGa                                                        >  1:660276/1‑204 (MQ=255)                                                                                                                                                                                     aacCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCTGGCCGGCgcc                                                                                                                                                                                                                   >  1:282425/1‑46 (MQ=255)                                                                                                                                                                                     aacCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTTGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCa                                                                                         >  2:174176/1‑170 (MQ=255)                                                                                                                                                                                     aacCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGa                                >  2:734095/1‑227 (MQ=255)                                                                                                                                                                                     aacCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGc                       >  1:9441/1‑236 (MQ=255)                                                                                                                                                                                                    acCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCGGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGcg                                                                                         >  1:202512/1‑154 (MQ=255)                                                                                                                                                                                                     cccTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCTCTTcc                                                                              >  1:138907/1‑165 (MQ=255)                                                                                                                                                                                                      ccTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTCGAGCAgt      <  1:734096/236‑1 (MQ=255)                                                                                                                                                                                                        ctcatggccaCGCCGGCCAGGCCGGCGTGGCCATGGGCGACCACCTGAGCGAGCGTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCCGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCt                                                                       <  1:756003‑M1/159‑1 (MQ=255)                                                                                                                                                                                                             gtcgGCGCCGGCCAGGCCGGCGTGGCCATGCGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTCGAGCAgtacgt  <  1:233567/233‑1 (MQ=255)                                                                                                                                                                                                              tcgGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCAc                                                                                        <  2:182458/146‑1 (MQ=255)                                                                                                                                                                                                              tcgGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTc             <  2:374929/221‑1 (MQ=255)                                                                                                                                                                                                                 gcgcCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTc             <  1:203739/218‑1 (MQ=255)                                                                                                                                                                                                                  |                                                                                                                                                                                                                                    CCGGCCAACCTGCCCCACAGGCCAGAAAACTCAAGGCCTTCGCCGTTTTATCGGCAAGTACCAGCTAAATACTATTTTCGCCATTTCCACGGCATCCCTAGTCTGGCTCCAGGCAACGGCGGTCCTCCAAACCGACCTGACAAAAACCGCCTGAACAAGGGCTCGGACATGACACTGAACAACCTCGAAATCGACACCCTCGTCGTCGGCGCCGGCCAGGCCGGCGTGGCCATGAGCGAACACCTGAGCAAGCTTGGCGTGCCGCACCTGGTACTGGAGCGCAACCGCATCGCGCAGGCCTGGCGTACCGGCCGCTGGGACTCGCTGGTCGCCAACGGCCCGGCCTGGCACGACCGCTTCCCGGGGCTGGAATTCAACCTCGACGCCGATGCATTCGCCGGCAAGGACCAGGTGGCCGACTACTTCGAGCAGTACGT  >  AE015451/4053259‑4053695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.