New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4932141	37 (0.910)	3 (0.080)	3/322	NT	6.9%	coding (77/741 nt)	fliA	RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons
	?	AE015451	= 4932230	45 (1.150)					coding (818/834 nt)	PP_4342	flagellar synthesis regulator, putative ATPase

CCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCA  >  AE015451/4931942‑4932373                                                                                                                                                                                                        |                                                                                                                                                                                                                                         ccAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTgg                                                                                                                                                                                                             >  1:524155/1‑229 (MQ=255) ccAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCt                                                                                                                                                                                                      >  1:586389/1‑236 (MQ=255)          tttGCGCTCTTCGTCCAGCATGGCCGCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGcgggacccgtactatgaacgccagcg                                                                                                                                                                                                                <  1:221310‑M1/217‑27 (MQ=255)             gcgcACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCgg                                                                                                                                                                                           >  1:370667/1‑235 (MQ=255)                                gCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCt                                                                                                                                                                       <  1:286031/236‑1 (MQ=255)                                                  ccGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGtt                                                                                                                                                                                                                              <  2:650800/163‑1 (MQ=255)                                                   cGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTcgccg                                                                                                                                                                                                <  1:439539/192‑1 (MQ=255)                                                                aaaGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGAAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGt                                                                                                                                                                  >  2:424872/1‑209 (MQ=255)                                                                   gCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCggg                                                                                                                                                                                                                                        >  1:67784/1‑136 (MQ=255)                                                                   gCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCggg                                                                                                                                                                                                                                        <  2:67784/136‑1 (MQ=255)                                                                         gcCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCaa                                                                                                                              >  1:610109/1‑236 (MQ=255)                                                                                cTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACgg                                                                                                                                                       <  2:649679/204‑1 (MQ=255)                                                                                        gtATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGt                                                                                                                                                                  >  2:544808/1‑185 (MQ=255)                                                                                                    cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTc                                                                                                                                                                                                        <  2:442033/135‑1 (MQ=255)                                                                                                    cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGcc                                                                                                   >  1:653130/1‑236 (MQ=255)                                                                                                          cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCcgcgcg                                                                                              >  1:404184/1‑235 (MQ=255)                                                                                                          cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCgg                                                                                             >  1:189053/1‑236 (MQ=255)                                                                                                                gCCGAGCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTGGGCCGGCAAGCGCGCCAACAGGTGGTAGGAGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATc                                                                                                                                                                                                                         <  2:104894/106‑1 (MQ=255)                                                                                                                   gATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATtggctg                                                                                     >  1:583649/1‑235 (MQ=255)                                                                                                                   gATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTCGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGAGGCGCTTGACCCGCGGGGc                                                                                                                                                                                                                                      >  2:125775/1‑90 (MQ=255)                                                                                                                    aTCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCCTAGTACGGGTCCCGcgctggcg                                                                                                                                         <  2:240795‑M2/182‑9 (MQ=255)                                                                                                                      cATGCCGGCCTGGATCAGGGCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCt                                                                                                                                                                       <  2:286625/150‑1 (MQ=255)                                                                                                                       aTGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTg                                                                                                                                                                                        >  2:53303/1‑132 (MQ=255)                                                                                                                        tGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaa                                                                                                                                                                                    <  1:562098‑M1/135‑55 (MQ=255)                                                                                                                        tGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaa                                                                                                                                                                                    >  2:562097‑M1/1‑81 (MQ=255)                                                                                                                          ccGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgct                                                                                                                                             >  2:22745‑M2/1‑168 (MQ=255)                                                                                                                               cTGGATCAGGTCGTCGACCTGCACGTGGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctggt                                                                                                                                          >  2:116709‑M2/1‑163 (MQ=255)                                                                                                                                 ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACaaa                                                                                                                  >  2:502180/1‑192 (MQ=255)                                                                                                                                 ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACaaa                                                                                                                  <  1:502181/192‑1 (MQ=255)                                                                                                                                 ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGGCCcg                                                                                                                                                 >  2:205363/1‑161 (MQ=255)                                                                                                                                     cAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTTGCAGCGGCCAGCTGTc                                                                     >  1:234021/1‑233 (MQ=255)                                                                                                                                       ggTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCt                                                                >  1:492458/1‑236 (MQ=255)                                                                                                                                          ccTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCtt                                                               >  2:636247/1‑234 (MQ=255)                                                                                                                                                    cgcGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGTACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGGAGCGGcc                                                                            <  2:752516/209‑1 (MQ=255)                                                                                                                                                      cGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCt                                                 >  1:471098/1‑236 (MQ=255)                                                                                                                                                        tgggCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTg                                                                       <  2:24824/210‑1 (MQ=255)                                                                                                                                                           gCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAg                                            >  1:306942/1‑236 (MQ=255)                                                                                                                                                             cGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTggg                                                                                                                                       >  2:331481/1‑143 (MQ=255)                                                                                                                                                                 aaGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAg                                       >  1:617819/1‑235 (MQ=255)                                                                                                                                                                        ccAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGt                                                                                                                                                                  <  1:168815/105‑1 (MQ=255)                                                                                                                                                                        ccAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAgc                                                                                                                            <  2:440092/143‑1 (MQ=255)                                                                                                                                                                                    aGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGAt                                                                                           >  2:36893/1‑164 (MQ=255)                                                                                                                                                                                      gCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCTGccc                                                                                                                                                                                             >  2:519902/1‑64 (MQ=255)                                                                                                                                                                                       tggcgcgcttgaCCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctcgtc                                                                                                                                         <  2:53903‑M2/111‑9 (MQ=255)                                                                                                                                                                                       cGATGCGCTTGACCAGCGGGGCGTAGCGCTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGCACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGCTGCACCAAGCGCTCGACAAAGAACTCCAGACgg                                                                                                     >  2:97306/1‑151 (MQ=255)                                                                                                                                                                                        gATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGGACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCa                                                                           >  2:259297/1‑176 (MQ=255)                                                                                                                                                                                            cgcTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAgcgcgc                                  >  1:604024/1‑213 (MQ=255)                                                                                                                                                                                                 gACGAGCGcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcgcca                                                                                                                               <  2:53903‑M1/115‑108 (MQ=255)                                                                                                                                                                                                 cgccagCGcgggacccgtactaggaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggccaacgtgcaggtcgaggacctgatccaggccggcatgat                                                            <  2:240795‑M1/180‑175 (MQ=255)                                                                                                                                                                                                  aCCAGCGcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggcccacgtgcaggtcgacgacctgatccag                                                                       >  2:116709‑M1/1‑7 (MQ=255)                                                                                                                                                                                                    cAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTG‑AGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCa  <  1:310396/236‑1 (MQ=255)                                                                                                                                                                                                     aGCGcgggacccgtactatgaacgccagcggcttcaagatgtacagccgggcggcgaaggacgcccagtacgagctgatcgaacgctacgccccgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggccaacgtgcaggtcgaggacctgatccaggccgg                                                                  >  2:22745‑M1/1‑4 (MQ=255)                                                                                                                                                                                                     aGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAgcgcgc                                  >  1:1395/1‑204 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                                                                                         CCAGTCGCCTTTGCGCACTTCGTCCAGCATGGCCCCGCGAATGCGGATGCCGGCGTAGGTCTCAAAGCTGGCGCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCA  >  AE015451/4931942‑4932373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.